Gene PC1_4078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4078 
Symbol 
ID8135076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4613820 
End bp4614299 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content37% 
IMG OID644867396 
Producttype VI secretion system effector, Hcp1 family 
Protein accessionYP_003019629 
Protein GI253690439 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00339373 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAATA ATATTTATCT AACGTTGACG GGAAATCAAC AAGGGAAAAT ATCTGCTGAG 
TGTGGCACCA TCGACTCGAT TGGTAATAAG TATCAGATAA GGCATCAAGA CCAAATTTTT 
GTTTTGCAAT TCGATCATGC TATCAGTCGT AACCAAAATA TTAATCATCA ACCTATAACG 
TTCTGTAAAC CTATTGATAA ATCATCTCCG CTCTTGGGTA ATGCTATAGC AAATAATGAA 
AAACTTGAGC TTTTGTTCGA CTTTTACCGA ACCGCGCAGA CTGGAGTACA GGAGAAATAT 
TATTCTGTTA AACTTATTGG AGCAGTTATA AGAAACATTG CCGTTTCCTA TCCACACGCT 
TTAACCCATG CAGAGAATCA ACCAGAAGAA ATGATATCTG TTGCTTATCA AAGCATAGAT 
TGGCAACACC ACATTGCTGG AACTGGTGGC TATAGTTTAT GGGAAGAACA GGTGTATTAA
 
Protein sequence
MANNIYLTLT GNQQGKISAE CGTIDSIGNK YQIRHQDQIF VLQFDHAISR NQNINHQPIT 
FCKPIDKSSP LLGNAIANNE KLELLFDFYR TAQTGVQEKY YSVKLIGAVI RNIAVSYPHA 
LTHAENQPEE MISVAYQSID WQHHIAGTGG YSLWEEQVY