Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4045 |
Symbol | fadA |
ID | 8135043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4575417 |
End bp | 4576580 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644867363 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | YP_003019596 |
Protein GI | 253690406 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.690184 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAGG TAGTGATTGT TGATGCCGTT CGTACGCCGA TGGGACGCTC CAAAGGCGGT GCCTTCCGTC AGGTAAGAGC CGAAGACCTG TCCGCACACC TGATGCGCAG CCTATTAAGC CGTAACGCGG CACTGGACGC CCGTGAGATC GACGATATCT ATTGGGGATG TGTGCAACAG ACGCTGGAGC AAGGGTTCAA CGTGGCTCGC AATGCTGCCT TGCTGGCAGA AATCCCGATG AATGTCCCCG CGACTACGGT TAACCGGCTG TGCGGTTCCT CCATGCAGGC GCTCCACGAT GCTGCCCGCA CCATTATGGT TGGCGACGCG GACGTTTGCT TAATCGGTGG CGTTGAGCAT ATGGGACATG TGCCGATGAA TCATGGCGTC GATTTTCATC CGGGACTGAG CCGCACCATA GCTAAAGCGG CAGGTATGAT GGGGCTCACG GCCGAGATGC TGGGGCGTAT GCACAATATT AGCCGTGAGA TGCAGGATCA GTTCGCCGCT CGCTCACACC AACGGGCCCA TCACGCCACC CAGTCAGGGG CGTTTCGCCA TGAAATCATC CCTACGGCAG GGCATGATGC AGACGGCGCA CTGCAACGCT TCGATTATGA TGAAGTCATT CGCCCAGACA CCACCGTCGA TAGCCTTGCG GCGCTCAAAC CGGCGTTCGA TCCGGTTAAC GGCACAGTGA CGGCCGGATC ATCCTCGGCG CTGTCCGATG GCGCAGCAGC CATGTTGATC ATGAGCGAAT CCCGCGCGGC ATCATTAGGT TTACCCGTAC GGGCTCGCAT CCGGGCGATG GCCGTAGTTG GCTGCGATCC TTCGATTATG GGCTACGGCC CGGTTCCGGC GACAAAACTG GCGCTGAAGC GGGCAGGATT GAGCCTGTCC GATATCGGCC TCTTTGAGCT TAATGAGGCC TTCGCCGCCC AGACGCTACC CTGCATTAAA GATCTGGGTT TGCTGGAACA GATCGATGAA AAGGTCAATC TCAACGGTGG TGCGATTGCG CTAGGTCACC CGCTCGGTTG CTCAGGCGCA CGCATCTCTA CCACATTGAT TAATTTGATG GAAAGCCGCG ATGTTCAGTT TGGCGTGGCG ACAATGTGCA TCGGGCTGGG ACAGGGTATT GCAACGGTGT TTGAGCGCGT CTGA
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Protein sequence | MEKVVIVDAV RTPMGRSKGG AFRQVRAEDL SAHLMRSLLS RNAALDAREI DDIYWGCVQQ TLEQGFNVAR NAALLAEIPM NVPATTVNRL CGSSMQALHD AARTIMVGDA DVCLIGGVEH MGHVPMNHGV DFHPGLSRTI AKAAGMMGLT AEMLGRMHNI SREMQDQFAA RSHQRAHHAT QSGAFRHEII PTAGHDADGA LQRFDYDEVI RPDTTVDSLA ALKPAFDPVN GTVTAGSSSA LSDGAAAMLI MSESRAASLG LPVRARIRAM AVVGCDPSIM GYGPVPATKL ALKRAGLSLS DIGLFELNEA FAAQTLPCIK DLGLLEQIDE KVNLNGGAIA LGHPLGCSGA RISTTLINLM ESRDVQFGVA TMCIGLGQGI ATVFERV
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