| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4027 |
|---|
| Symbol | |
|---|
| ID | 8135018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4547225 |
|---|
| End bp | 4547704 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 644867338 |
|---|
| Product | type VI secretion system effector, Hcp1 family |
|---|
| Protein accession | YP_003019578 |
|---|
| Protein GI | 253690388 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.363751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGTA TTATCTATTT AGAGTTGACG GGTGATAAGC AAGGATTAAT TTCTTCTGGC
TGTTCAACAT TACAGTCAAT TGGTAATAGA AGCCAAATTG GTCATGAAGA TCAGATTCAG
GTGTTAAGTT TAAATCACTC AATGAGTCAT GCTGATAATC TATCTTGTCA TCCCGTTGAA
ATAATTAAAC TTATCGATAA ATCGTCACCA TTGCTTGGTG TTTCTACCTC TTCCAATGAA
AAGCTAAGTG CAAATTTCTT TTTGTATAGG ATAAATGCCG CTGGGCAATT AGAGTTGTTT
TATGTCATTA AATTAACAGA TGCCCGCATT GTTGACATTT CTTGTAGTTA TCCGCATTCG
ATTAATGACA ATGACGTAAT GCCATATGAG AAAGTTTTAT TAAAGTATAA CTCCATATCA
TGGGAACACA AAGTTGCGGG AACATCAGGT TATAGTATCT GGAATGATAG TGGTATTTAG
|
|---|
| Protein sequence | MSSIIYLELT GDKQGLISSG CSTLQSIGNR SQIGHEDQIQ VLSLNHSMSH ADNLSCHPVE
IIKLIDKSSP LLGVSTSSNE KLSANFFLYR INAAGQLELF YVIKLTDARI VDISCSYPHS
INDNDVMPYE KVLLKYNSIS WEHKVAGTSG YSIWNDSGI
|
|---|
| |