| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3975 |
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| Symbol | dapF |
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| ID | 8134962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4486026 |
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| End bp | 4486850 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644867282 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_003019526 |
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| Protein GI | 253690336 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.525187 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGTTCG CTAAGATGCA CGGATTAGGC AACGATTTCA TGGTTGTTGA TGCTGTTACG
CAAAACGTTT ATTTTTCACC CGAATTGATT CGCCGTTTGG CGGATCGGCA CTGTGGTGTG
GGGTTTGACC AACTGCTGGT CGTTGAGCCG CCCTACGATC CTGAACTGGA TTTTCATTAT
CGTATTTTTA ACGCGGATGG CAGTGAAGTG GCACAGTGCG GTAACGGTGC GCGCTGCTTT
GCTCGTTTTG TTCGCCTGAA AGGGCTGACC AACAAGCGTG ATATCGCCGT CAGTACGCAG
ACGGGCCGGA TGGTGCTGTC TGTGACGGAT GATGAACTGG TGCGCGTCAA CATGGGCGAA
CCGAATTTCG AGCCGCAACA GGTGCCTTTT CGCGCGGTCA AAGCAGAGAA AACCTACATC
ATGCGTGCCG ATGAACACAC GGTACTTTGC GGCGTGGTGT CGATGGGCAA CCCGCACTGC
GTGATTCAGG TTGAGGATGT GGACACGGCG AAAGTGGAAA CGCTGGGGCC GCTGTTGGAA
AGCCACGAGC GTTTTCCCGA GCGAGCCAAC ATTGGTTTTA TGCAGGTTGT CGATAGCCAC
ACTGTCCGCC TGCGGGTGTA CGAGCGCGGT GCGGGAGAAA CGCAGGCGTG TGGTAGCGGC
GCGTGTGCCG CCGTAGCGGT AGGGATCCAG CAGGGGCTAT TGTCCGCGAA CGTTCGCGTG
TCTCTGCCGG GCGGGGATTT GGATATCCAG TGGGATGGGC CGGGACATCC GTTATTCATG
ACCGGGCCTG CAACGCATGT CTACGATGGA TTTATTCATT TATGA
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| Protein sequence | MQFAKMHGLG NDFMVVDAVT QNVYFSPELI RRLADRHCGV GFDQLLVVEP PYDPELDFHY
RIFNADGSEV AQCGNGARCF ARFVRLKGLT NKRDIAVSTQ TGRMVLSVTD DELVRVNMGE
PNFEPQQVPF RAVKAEKTYI MRADEHTVLC GVVSMGNPHC VIQVEDVDTA KVETLGPLLE
SHERFPERAN IGFMQVVDSH TVRLRVYERG AGETQACGSG ACAAVAVGIQ QGLLSANVRV
SLPGGDLDIQ WDGPGHPLFM TGPATHVYDG FIHL
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