Gene PC1_3964 details

Gene Information

• Locus tag: PC1_3964
• ID: 8134951
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 4473292
• End bp: 4475118
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644867271
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_003019515
• Protein GI: 253690325
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.9333
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTACGG CGGAAGTATT GAATAAGGAA GCGCTGGCGG TTCAGGTTCT GCGGGACACG 
TTCGGCTACC AGCAATTCCG ACCGGGTCAG CAGGAAATTA TCAGCGCGAC GCTCAGTGGG 
CAGGATTGTC TGGTGATCAT GCCGACAGGC GGCGGCAAGT CGCTGTGCTA TCAAATCCCT 
GCACTGGTGA TGGACGGGCT GACGCTGGTG GTGTCCCCGC TGATTTCACT GATGAAAGAT 
CAGGTCGATC AGCTTCAGGC CTACGGCGTG TCGGCGGCCT GCCTGAATTC GACGCAAACG 
CGTGAACAGC AGCTTGAGGT GATGGCGGGT TGCCGTACCG GCCAGATCAA ATTGCTGTAT 
ATTGCGCCGG AACGTCTGAC GACAGACAGC TTCCTCGATC ATCTCGCCCA CTGGCAGATC 
GCCCTGATCG CGGTGGATGA AGCGCACTGC ATTTCCCAAT GGGGACACGA TTTCCGCCCT 
GAATACCGCG CTCTGGGGCA GATTAAACAG CGTTTTCCGC ATCTTCCTTT CATTGCTTTG 
ACGGCCACCG CTGACGAGAC CACGCGCAAC GATATCGTTC GCCTGCTGGA TCTTCAGTCG 
CCGCTCATTC AGATCAACAG TTTTGACCGC CCGAATATTC GCTACACGTT GGTAGAGAAA 
TTCAAACCGC TCGATCAGCT CTGGATGTTC GTGCAGGGGC AGCGGGGGAA AAGTGGCATC 
ATCTACTGCA ATAGCCGCTC CCGCGTGGAA GACATTTGCG CGCGTTTGCA GGCGCGAGGG 
CTGAGCGCAG GGGCTTATCA CGCCGGTCTG GATAACGAGC GGCGTGCGCA GGTGCAGGAA 
GCGTTTCTAC GTGACGATCT TCAGGTGGTA GTCGCGACCG TCGCATTTGG TATGGGCATC 
AACAAACCTA ACGTGCGGTT TGTGGTGCAC TTTGATATTC CGCGCAACAT CGAATCCTAC 
TATCAGGAAA CGGGGCGTGC CGGACGTGAC GGCCTCGCTG CTGAAGCTGC GTTGTTCTAC 
GATCCGGCGG ATATGGCGTG GCTGCGCCGC TGCCTGGAAG AAAAACCCGC CGGGCCGCAG 
TTGGATATCG AGCGCCATAA GCTCAATGCG ATGGGGGCGT TTGCCGAAGC GCAGACCTGC 
CGTCGTCTGG TGCTGCTGAA CTATTTCGGT GAAGGGCGCC AACAACCTTG CGGTAACTGC 
GATGTTTGTC TCGATCCGCC GAAGCGTTAC GACGGGCTGG TTGAGGCGCA AAAAGCGCTG 
TCCTGCGTGT ATCGCGTCGG TCAGCGCTTT GGTTTAGGGT ATATCGTCGA GGTGCTGCGC 
GGCGCAAATA ACCAGCGTAT CCGGGACTTC GGCCATGACA AGCTGCCGGT TTACGGCATC 
GGCAAGGATA AATCACAGGA GCATTGGGTC AGCGTACTGC GCCAACTGAT TCATCTGGGC 
TTGCTGAACC AGAACATCAC GATGCATTCC GCCGTACAGC TTACCGAATC GGCACGTCCG 
GTATTGCGGG GAGAAGTGCC GCTACAGCTG GCTGTGCCGC GAGTGATTAA CCTGAAGCCT 
CGCGCGAATC AGAAATCTTA TGGCGGAAAT TACGACCGTA AGCTGTTCGC CAAATTGCGC 
AAATTGCGTA AATCGATTGC GGATGAAGAC AATATTCCAC CTTACGTGGT GTTCAGCGAT 
GCGACGCTGC TGGAGATGGC GGAACTGATG CCGATCACCG CGGGTGAATT GCTGAATATC 
AACGGGGTCG GTCACCGTAA GCTTGAACGC TTTGGTGCGC CCTTCATGAA CATGATTCGC 
GATCATGTCG ATAATGATGA CGAGTAA 

 

Protein sequence

MSTAEVLNKE ALAVQVLRDT FGYQQFRPGQ QEIISATLSG QDCLVIMPTG GGKSLCYQIP 
ALVMDGLTLV VSPLISLMKD QVDQLQAYGV SAACLNSTQT REQQLEVMAG CRTGQIKLLY 
IAPERLTTDS FLDHLAHWQI ALIAVDEAHC ISQWGHDFRP EYRALGQIKQ RFPHLPFIAL 
TATADETTRN DIVRLLDLQS PLIQINSFDR PNIRYTLVEK FKPLDQLWMF VQGQRGKSGI 
IYCNSRSRVE DICARLQARG LSAGAYHAGL DNERRAQVQE AFLRDDLQVV VATVAFGMGI 
NKPNVRFVVH FDIPRNIESY YQETGRAGRD GLAAEAALFY DPADMAWLRR CLEEKPAGPQ 
LDIERHKLNA MGAFAEAQTC RRLVLLNYFG EGRQQPCGNC DVCLDPPKRY DGLVEAQKAL 
SCVYRVGQRF GLGYIVEVLR GANNQRIRDF GHDKLPVYGI GKDKSQEHWV SVLRQLIHLG 
LLNQNITMHS AVQLTESARP VLRGEVPLQL AVPRVINLKP RANQKSYGGN YDRKLFAKLR 
KLRKSIADED NIPPYVVFSD ATLLEMAELM PITAGELLNI NGVGHRKLER FGAPFMNMIR 
DHVDNDDE