Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3958 |
Symbol | glpT |
ID | 8134945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4467343 |
End bp | 4468692 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644867265 |
Product | sn-glycerol-3-phosphate transporter |
Protein accession | YP_003019509 |
Protein GI | 253690319 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00712] glycerol-3-phosphate transporter [TIGR00881] phosphoglycerate transporter family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00220837 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGTA TTTTTAGGCC TGCAGCCCAC CAGGCGCGCG TATCGCAGGA TCGTGTCGAT CCCCTCTATC GCCGTCTGCG CTGGCAGATA TTCATGGGGA TCTTTTTTGG CTACGCCGCC TACTATCTGG TACGCAAAAA CTTCACACTG GCAATGCCTT ACCTGATTGA ACAGGGCTTC TCACGCGGTG ACCTTGGCTT TGCGCTATCC GGTATCTCTA TCGCCTACGG CTTTTCCAAA TTCATCATGG GTTCGGTATC TGACCGTTCC AACCCACGGG TTTTCCTGCC TGCCGGTCTG ATTCTGGCAG CCGCCGTGAT GCTGTTCATG GGCTTCGTGC CGTGGGCAAC ATCAAGCATC GCGATTATGT TCGTCCTGCT GTTCATGTGC GGCTGGTTCC AGGGAATGGG ATGGCCACCG TGTGGACGCA CCATGGTTCA CTGGTGGTCG CAGAAAGAGC GTGGCGGCAT CGTATCCGTC TGGAACTGTG CTCACAACGT CGGCGGCGGG CTTCCGCCTC TGCTGTTCCT GATGGGTATG GCCTGGTTTA ACGACTGGAA AGCCGCACTT TATATGCCGG CCTTCGCCGC GATTCTGGTT GCTCTGATTG CGTTTGCACT GATGCGTGAC ACACCGCAAT CCTGTGGTTT GCCACCGATT GAAGAGTACA AAAACGACTA CCCCGTTGAT TACAATGAAA AAGACGAAGA AGAACTGACG GCTAAGCAGA TTTTCATGCA GTACGTTTTC CCGAACAAAC TGCTGTGGTA CATCGCTATC GCCAACGTCT TCGTTTACCT GCTGCGTTAC GGCATCCTCG ACTGGTCACC GACTTATCTG AAAGAAGTGA AACACTTCGC ACTGGATAAA TCCTCCTGGG CCTACTTCCT GTACGAATAC GCAGGTATTC CGGGTACGCT GCTGTGCGGC TGGATGTCCG ATAAAGTGTT CAAAGGCAAC CGTGGTGCAA CGGGCGTGTT CTTTATGACG CTGGTGACGA TAGCGACCAT CGTGTACTGG ATGAACCCAG CCGGTAATCC GGGTGTGGAT ATGGCCTGTA TGATCGTCAT CGGCTTCCTG ATTTACGGCC CGGTGATGCT GATTGGTCTG CACGCACTGG AGCTGGCACC GAAGAAAGCA GCAGGTACAG CAGCGGGCTT CACCGGCCTG TTCGGCTACC TCGGTGGCTC CGTTGCCGCT AGCGCCATCG TCGGCTACAC CGTTGACTTT TTCGGTTGGG ACGGCGGCTT CATGGTGATG ATCGGCGGCA GCATTCTGGC GGTACTTCTG CTGATTGTTG TTATGCTGAA TGAGAAAAAA CATAAAGCAG AGTTAGCCAG CCGCGCTTAA
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Protein sequence | MLSIFRPAAH QARVSQDRVD PLYRRLRWQI FMGIFFGYAA YYLVRKNFTL AMPYLIEQGF SRGDLGFALS GISIAYGFSK FIMGSVSDRS NPRVFLPAGL ILAAAVMLFM GFVPWATSSI AIMFVLLFMC GWFQGMGWPP CGRTMVHWWS QKERGGIVSV WNCAHNVGGG LPPLLFLMGM AWFNDWKAAL YMPAFAAILV ALIAFALMRD TPQSCGLPPI EEYKNDYPVD YNEKDEEELT AKQIFMQYVF PNKLLWYIAI ANVFVYLLRY GILDWSPTYL KEVKHFALDK SSWAYFLYEY AGIPGTLLCG WMSDKVFKGN RGATGVFFMT LVTIATIVYW MNPAGNPGVD MACMIVIGFL IYGPVMLIGL HALELAPKKA AGTAAGFTGL FGYLGGSVAA SAIVGYTVDF FGWDGGFMVM IGGSILAVLL LIVVMLNEKK HKAELASRA
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