| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3923 |
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| Symbol | |
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| ID | 8134910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4417818 |
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| End bp | 4420934 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644867230 |
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| Product | aminoglycoside/multidrug efflux system |
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| Protein accession | YP_003019474 |
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| Protein GI | 253690284 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.72261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAATT TTTTTGTCGA CCGTCCTATT TTTGCGTGGG TGCTGGCTAT CCTTCTCAGC
CTATGCGGTA TGTTGGCTAT CAAGTCATTG CCTCTGGAAC AGTATCCCGA TCTGGCGCCG
CCCAGCGTGC GGATCACGGC GAGCTACCCA GGCGCATCGG CACAGACGCT GGAAAATACC
GTCACACAGG TTATTGAGCA GAGCATGACC GGGCTGGATA ACCTGATGTA CATGTCCTCA
GACAGCAGTA ATACCGGGCA AGCCCGTGTC ATGCTGACCT TCGAGGCGGG TACCAATCCC
GATGAAGCTC GCCAGCAGGT GCAAAACCAG CTTCAATCCG CTATCCGCAA GCTGCCGCAG
GAAGTCCAGC AGCAGGGCGT CACCGTGAGT AAAACGGGCG ATACCAATAT TCTGATGGTC
GCGTTTGTCT CTACCGATGG CAGTATGGAC AAGCAGGATA TCGCCGATTA TGTCGCGACG
AATATTCAGG AACCAATTAG CCGTATCAGC GGGGTGGGCG AGGTTTCTGC ATATGGATCG
CAGTATGCGA TGCGTATCTG GCTGGATCCG GCCAAACTGA TGGATTATGC GCTGACCACC
AGCGATGTGG TTCGAGCCAT CGAATCGCAG AACAGTCAGG TTTCGGTAGG GCAAGTCGGC
GGTGTACCGT CGGTGGATAA TCAGGCGCTT AACGCGACGA TCAACGCACA ATCCCTGTTA
CAGACGCCAC AGCAGTTCCG TGATATCACG CTGCGCGTCA ATCAGGACGG CTCCGCTGTG
ACGTTAGCTA ACGTTGCAGA AGTCGAACTG GGTGCCGAAC GCTACGATTT TCTCAGCCGT
TTCAACGGCC AGTCCGCTTC TGGTCTGGGG GTGACGCTGG CGTCTGGCGC GAATGAACTG
GAAACCGACA AGCGCGTCAG AGAACGTATC GATGAGCTAT CACGTTATTT TCCGCACGGG
ATGGAAGCCA AAATCGCTTT CGAAACCTCC CCCTTTGTTA AAGCTTCTAT CACCGACGTG
GTGAAAACCC TGTTTGAAGC GGTGCTGCTG GTCTTTCTGG TGATGTACCT ATTCTTGCAG
AATTTCCGCG CCACGCTGAT TCCTACGATT GCGGTGCCGG TAGTGTTACT CGGTACGTTT
GCCGTGCTGT ACGCCTGTGG ATTCAGTCTG AACACCCTGA CAATGTTCGC GATGGTGCTG
GCGATTGGCC TGCTGGTGGA CGATGCCATC GTGGTGGTGG AAAACGTAGA GCGGGTGATG
AGCGAAGAGG GGCTCTCGCC ACGGGAAGCG ACGCGAAAAT CGATGGGACA GGTGCAGGGG
GCGCTGGTGG GGATTGCGCT GGTGCTGTCC GCCGTGTTTG TGCCGATGGC CTTCTTTGGC
GGCACCACGG GGGCGATTTA CCGTCAGTTC TCCATCACGA TTGTGACATC AATGATTCTG
TCGGTGCTGG TGGCGATGAT TCTGACGCCT GCGCTGTGCG CGACGTTGCT CAAGCCGCTT
GCTAAGGGGC AACATCACGG CCGCAAAGGG TTCTTCGGCT GGTTTAACCG GAGCTTTACC
CGCACGTCGC TGAAGTATGA GCGCGGCGTC GGCAAGATAT TGATGAGCAG CGGGCGCTGG
CTGCTGCTGT ATATGGGCAT CATCGGCGTT ATGGCTTTCC TGTTTTTTCG GCTGCCGACC
TCGTTTCTGC CGCAGGAAGA TCGGGGCGTG TTCACGACTC AAGTGCAGCT ACCGCCGGGT
TCGACGCAGC AGCAGACCTT ACAGGTGGTC AACAAGATCG AGCAGTATTA TCTCACGCAG
GAAAAAGACA CGGTGACGTC CGTGTTTTCC ACCATTGGCT CGGGGCCGGG CGGAAACGGG
CAAAACGTGG CGCGGCTGTT TATACGCCTT AAAGACTGGA ACGAACGCAC CACACCGGAG
AGCAGCTCGT TTGCCGTGAT CGAACGCGCG ACCAAAGCCT TTCGTCATAT TCAGGAAGCG
CGCGTGTTTG CCAGTAGCCC GCCGTCAATT AACGGGCTGG GGAGTGCCGC CGGTTTCGCC
ATGCGCTTAC AGGATCGCGG GGGACTGGGA CACGATGCGC TGATGGCCGC ACGGGATCAG
CTGTTAAATA TGGCTGATAG CAATCCCGAA CTGACGCGCG TGCGTCACAA CGGTCTGGAT
GACAGCTCGC AGTTGCGGAT TCATATCGAT CAGCGCAAAG CACAGGCGCT GGGTGTGTCG
GTGGATGACA TTAACAGCAC GCTGAAAACT GGCTGGGGCT CGACCTATGT GAATGACTTT
CTCGATCGTG GCCGCGTGAA GAAAGTCTAT GTTCAGGCGG CGGCGAAGTT CCGTATGCTG
CCGGACGACA TCAGTAAATG GTATGTGCGC AACAACCGTG GCGGCATGGT GCCGTTCAGT
GCGTTTGCGC AAACCGTCTG GGAAACCGGT TCGCCGCGTC TTGAGCGTTA CAACGGTTAT
TCCTCGCTGG AAATTGTCGG CGAGGCGATG CCGGGCGTCA GTACCGGTAC GGCCATGACG
GTCATGGAGT CTCTGGTGGC GAAGCTGCCA GAAGGCTTTG GCTTAGAGTG GACCGGCATG
TCGTTGCAGG AGCGATTGAG CGGGGCGCAG GCTCCGGCGC TGTATGCGAT TTCTCTGCTG
GTGGTGTTTC TGTGTCTGGC CGCGCTGTAT GAAAGCTGGA CGGTGCCGTT TTCCGTCATG
CTGGTGGTGC CGATGGGCGT GCTGGGGGCG CTGGTGGCAA CCTGGGCACG CGGGCTGGAA
AACGATGTCT ATTTTCAGGT TGGGCTATTG ACCGTGGTTG GGCTATCGGC GAAGAACGCC
ATTCTGATTG TGGAATTCGC CAACGAGATG AACCAGAAAG GGAAGGATCT GGTTGAGGCC
ACGCTGGAGG CTTCCCGCCA GCGGCTGCGG CCGATATTGA TGACGTCACT GGCATTTATT
TTCGGTGTTC TGCCGATGGC GACAAGCAGC GGCGCGGGTT CGGCCAGTCA GCATGCAGTG
GGAACGGGCG TGATCGGCGG TATGCTGGCT GCGACTTTCC TCGCCATCTT CTTCGTGCCG
CTGTTCTTTG TCGTCGTGCG CCGCCGCTTT CCGTTAAAGG AGAAGACGCT GGAGTAG
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| Protein sequence | MANFFVDRPI FAWVLAILLS LCGMLAIKSL PLEQYPDLAP PSVRITASYP GASAQTLENT
VTQVIEQSMT GLDNLMYMSS DSSNTGQARV MLTFEAGTNP DEARQQVQNQ LQSAIRKLPQ
EVQQQGVTVS KTGDTNILMV AFVSTDGSMD KQDIADYVAT NIQEPISRIS GVGEVSAYGS
QYAMRIWLDP AKLMDYALTT SDVVRAIESQ NSQVSVGQVG GVPSVDNQAL NATINAQSLL
QTPQQFRDIT LRVNQDGSAV TLANVAEVEL GAERYDFLSR FNGQSASGLG VTLASGANEL
ETDKRVRERI DELSRYFPHG MEAKIAFETS PFVKASITDV VKTLFEAVLL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF AVLYACGFSL NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLSPREA TRKSMGQVQG ALVGIALVLS AVFVPMAFFG GTTGAIYRQF SITIVTSMIL
SVLVAMILTP ALCATLLKPL AKGQHHGRKG FFGWFNRSFT RTSLKYERGV GKILMSSGRW
LLLYMGIIGV MAFLFFRLPT SFLPQEDRGV FTTQVQLPPG STQQQTLQVV NKIEQYYLTQ
EKDTVTSVFS TIGSGPGGNG QNVARLFIRL KDWNERTTPE SSSFAVIERA TKAFRHIQEA
RVFASSPPSI NGLGSAAGFA MRLQDRGGLG HDALMAARDQ LLNMADSNPE LTRVRHNGLD
DSSQLRIHID QRKAQALGVS VDDINSTLKT GWGSTYVNDF LDRGRVKKVY VQAAAKFRML
PDDISKWYVR NNRGGMVPFS AFAQTVWETG SPRLERYNGY SSLEIVGEAM PGVSTGTAMT
VMESLVAKLP EGFGLEWTGM SLQERLSGAQ APALYAISLL VVFLCLAALY ESWTVPFSVM
LVVPMGVLGA LVATWARGLE NDVYFQVGLL TVVGLSAKNA ILIVEFANEM NQKGKDLVEA
TLEASRQRLR PILMTSLAFI FGVLPMATSS GAGSASQHAV GTGVIGGMLA ATFLAIFFVP
LFFVVVRRRF PLKEKTLE
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