Gene PC1_3916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3916 
Symbol 
ID8134903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4410300 
End bp4411349 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content54% 
IMG OID644867223 
ProductL-asparaginase, type II 
Protein accessionYP_003019467 
Protein GI253690277 
COG category[E] Amino acid transport and metabolism
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0252] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 
TIGRFAM ID[TIGR00520] L-asparaginases, type II 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.823534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACTCT CATTCATCGC TCGCACCATC ACCGCCGCTT GCCTGATGTT ATCATCCCAT 
GTACTGCTGG CCGATGACGC CAAACCTGGC GTTACGATAT ACGCAACAGG GGGGACCATC 
GCCGGAAAGG CAGAATCTAA TACGGATACG ACAGGCTATA AGGCGGGCGC GATCGGCATT 
CAGGAACTGC TGAACGCTGT ACCCACTATT GGCGATGTCG CGACGGTAAC CGGTGAGCAA 
ATCGCCAACA CCGCCAGCGG GAATATCGAT CAGGCTATTC TGTTGAAGCT ATCCAAAGCG 
ATTAACAAAC AGTTAAGCGA CGCAAACACA CACGGCGTCG TTGTGACTCA CGGCACCGAT 
ACGTTGGAAG AGACGGCGTT CTTTTTGGAT CTGACGGTAA AAAGTGAGAA ACCGGTGGTG 
ATCGTTGGCG CAATGCGTCC CGCCACCGCC ATCAGTGCGG ACGGTTCCAT GAACCTGCTG 
GAAGCCGTCA CGCTGGCGAC CAGCAAGAAC GCGGAAAAAC GCGGCGCGAT GGTGCTGCTC 
AACGACCGCA TCGGTTCCGC CTTCTATACC ACCAAAACCA ATGCCACGTC GCTGGACACG 
TTCAAAGCCA ATGAACAAGG CTATCTCGGT GCCTTCTACG GCGGCGTTCC ACGCTTCTTC 
TACCAGCCAG CCGCTCCCGA AAACAAACCG TTCTTTGACG TAAGTAATAA GGAAGCGCTC 
GCGAAGGTCG ACATTCTGTA CAGCTATCAG GATCAAGACA GCGGCCTGCT GAATGCCGCG 
ATTGAACAGG GCGCAAAAGG GATCATCATC GCGGGTAGCG GTAACGGTTC TACGCCAACG 
CGTATCAAAG AAGACATCAA GAAAGCGGTA GCCAAAGGTA TTCCGGTGGT GATCAGCACA 
CGCACCGGCA ACGGCTATGT AACGGATAAG AAGAAAGACG GTGCTATCGG CAGTGGATTC 
TACAACCCGC AGAAAGCCCG CATTCTGCTC TCTCTGGCGT TGTCTAACGG CGACGATATC 
GAGAAAATCC GCAGCTATTT CGAGCAGTAA
 
Protein sequence
MQLSFIARTI TAACLMLSSH VLLADDAKPG VTIYATGGTI AGKAESNTDT TGYKAGAIGI 
QELLNAVPTI GDVATVTGEQ IANTASGNID QAILLKLSKA INKQLSDANT HGVVVTHGTD 
TLEETAFFLD LTVKSEKPVV IVGAMRPATA ISADGSMNLL EAVTLATSKN AEKRGAMVLL 
NDRIGSAFYT TKTNATSLDT FKANEQGYLG AFYGGVPRFF YQPAAPENKP FFDVSNKEAL 
AKVDILYSYQ DQDSGLLNAA IEQGAKGIII AGSGNGSTPT RIKEDIKKAV AKGIPVVIST 
RTGNGYVTDK KKDGAIGSGF YNPQKARILL SLALSNGDDI EKIRSYFEQ