| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3792 |
|---|
| Symbol | trkA |
|---|
| ID | 8134779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4291977 |
|---|
| End bp | 4293353 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644867099 |
|---|
| Product | potassium transporter peripheral membrane component |
|---|
| Protein accession | YP_003019343 |
|---|
| Protein GI | 253690153 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA TCATCCTTGG CGCGGGTCAG GTCGGTGGAA CACTGGCAGA AAATCTAGCC
GGTGAAAACA ATGACATCAC TGTCGTTGAT ACTGATGCAA ATCGGTTACG CCAGCTTCAG
GATAAGTTTG ATCTACGCGT CGTTACGGGC TATGCCTCTC ACCCGCGAGT ACTGCGTGAA
GCGGGAGCGG AAGATGCTGA TATGCTGGTC GCCGTTACCA ATTCAGATGA AACGAATATG
GTCGCCTGCC AGATCGCTTA TTCTCTTTTC AAAACCCCAA ACCGGATTGC GCGCATTCGT
GCTGCCGAAT ACATCCGTGA ATCAGAACAG CTGTTTTTAC CAGAAGCGGT TCCCATCGAC
CACCTGATCT CCCCAGAGCA ATTGGTAATC GATAACATCT ACAAACTGAT CGAATATCCT
GGAGCACTTC AGGTCGTCAA CTTCGCTGAA GGCAAAGTGA GCCTTGCTGC AGTTAATGCC
TATTATGGCG GCCCATTAGT TGGTAACGCT CTTACCTCTC TTCGTGAACA CATTCCTCAT
GTAGAGACAC GCGTTGCGGC TATTTTTCGT CACGATCGTC CGATTCGCCC ACAAGGTTCC
ACTATCATCG AAGCTGGTGA CGAAGTGTTT TTTGTCGCGG CTTCCCAACA TATTCGCGCA
GTGATGAGCG AATTACAGCG CCTTGAAAAA CCATATAAAA GGATCATGAT CGTTGGCGGA
GGTAACGTCG GCGCCGGGTT AGCCCAGCGG TTAGAAAAAG ACTACAGCAT CAAACTGATA
GAGCGAAATG CAGATCGTGC AGCAGAACTG GCTGAGCTTC TGCAAAATAC AGTGGTATTT
CACGGCGATG CTTCAGACCA GGAGCTCCTT GCTGAAGAAC ATATTGAGCA GATTGATGTA
TTCATCGCCA TTACCAATGA TGACGAAGCG AATATTATGT CAGCGATGCT AGCCAAACGT
ATGGGCGCGA AAAAAGTGAT GGTGCTCATC CAACGCAGGG CTTATGTCGA TCTGGTCCAG
GGTAGCGTCA TTGATGTCGC TATCTCCCCA CAACAGGCAA CAATTTCTGC CCTGCTCAGC
CACGTCCGCA AGGCAGATAT CGTCAGCGTA TCCTCTTTGC GCCGCGGTGT AGCCGAAGCA
ATCGAGGCTA TCGCCCACGG TGACGAGGGC ACATCGAAAG TTGTCGGAAG AATGATCGAA
GATATTAAGC TTCCCCCCGG TACCACTATC GGCGCAATCG TGCGCGGTGA TGACGTCATC
ATTGCCAATG CAAATAGCAA AATCGAGCAA GGCGATCATG TCATCATGTT CTTAGCTGAC
AAAAAATTTG TGCCTGATGT TGAACGACTA TTTCAACCCA GCCCCTTCTT TTTGTAA
|
|---|
| Protein sequence | MKIIILGAGQ VGGTLAENLA GENNDITVVD TDANRLRQLQ DKFDLRVVTG YASHPRVLRE
AGAEDADMLV AVTNSDETNM VACQIAYSLF KTPNRIARIR AAEYIRESEQ LFLPEAVPID
HLISPEQLVI DNIYKLIEYP GALQVVNFAE GKVSLAAVNA YYGGPLVGNA LTSLREHIPH
VETRVAAIFR HDRPIRPQGS TIIEAGDEVF FVAASQHIRA VMSELQRLEK PYKRIMIVGG
GNVGAGLAQR LEKDYSIKLI ERNADRAAEL AELLQNTVVF HGDASDQELL AEEHIEQIDV
FIAITNDDEA NIMSAMLAKR MGAKKVMVLI QRRAYVDLVQ GSVIDVAISP QQATISALLS
HVRKADIVSV SSLRRGVAEA IEAIAHGDEG TSKVVGRMIE DIKLPPGTTI GAIVRGDDVI
IANANSKIEQ GDHVIMFLAD KKFVPDVERL FQPSPFFL
|
|---|
| |