Gene PC1_3789 details

Gene Information

• Locus tag: PC1_3789
• Symbol: def
• ID: 8134776
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 4289081
• End bp: 4289593
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 644867096
• Product: peptide deformylase
• Protein accession: YP_003019340
• Protein GI: 253690150
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.156401
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGTTT TGCAGGTATT ACATTTCCCA GACGAGCGGC TCCGCATTAC TGCGCAGCCC 
GTAAAAGAAG TCAATGCAGA TATTCAACGT ATCGTGGATG ATATGTTCGA TACCATGTAC 
GAAGAAGAAG GTATTGGACT GGCCGCGACA CAGGTGGATA TCCATCAACG TATCATTGTT 
ATTGACGTCT CTGAAGAACG AGACCAACGG CTGGTGTTAA TCAATCCCGA ACTGATTGAA 
AAGAGCGGCG ATACTGGTAT CGAAGAGGGT TGCCTGTCGA TCCCCGAAAC GCGCGCGCTG 
GTTCCTCGTG CAGAGCATGT AAAAGTGCGT GCATTGGATC GTGAAGGTAA GACGTTCGAA 
CTTGAAGCAA GCGAGCTATT GGCCATTTGT ATCCAGCATG AAATGGATCA TCTGGTTGGG 
AAACTGTTTA TCGATTACCT TTCCCCGCTT AAACGCCAGC GCATTCGTCA AAAACTGGAA 
AAACTGGCTA AGCAGAATAG CCGAGCCCGC TAA 

 

Protein sequence

MAVLQVLHFP DERLRITAQP VKEVNADIQR IVDDMFDTMY EEEGIGLAAT QVDIHQRIIV 
IDVSEERDQR LVLINPELIE KSGDTGIEEG CLSIPETRAL VPRAEHVKVR ALDREGKTFE 
LEASELLAIC IQHEMDHLVG KLFIDYLSPL KRQRIRQKLE KLAKQNSRAR