| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3778 |
|---|
| Symbol | |
|---|
| ID | 8134761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4274251 |
|---|
| End bp | 4275558 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644867081 |
|---|
| Product | isocitrate lyase |
|---|
| Protein accession | YP_003019329 |
|---|
| Protein GI | 253690139 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2224] Isocitrate lyase |
|---|
| TIGRFAM ID | [TIGR01346] isocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCT CTCGTACCCA ACAAGTCCAG CATATTGAAA AAGAGTGGAA AACCGCGCGC
TGGGAAGGTA TTACGCGCCC CTACAGCGCA GAAGATGTGA TTAATCTACG GGGTTCGGTG
AACCCGGAAT GTACGCTCGC GCAGCTCGGT GCTGCGAAGC TGTGGAACCT GCTACATGGT
GATGCGCGCA AAGGCTATGT GAATTGCCTG GGCGCGCTGA CCGGCGGACA GGCTTTACAG
CAGGCGAAAG CGGGCATTGA GGCGATTTAC CTTTCCGGCT GGCAGGTGGC GGCGGATGCC
AATCTGGCGT CCAGCATGTA TCCCGATCAG TCGCTCTACC CGGCGAACTC TGTGCCCGCA
GTGATTGAAC GCATCAATAA TACGTTTCGG CGTGCCGATC AGATTCAGTG GGCGAACCAC
ATTGAGCCGG GCGACAAGCG TCATACCGAC TACTTCCTGC CGATTGTGGC GGATGCGGAG
GCGGGATTTG GCGGCGTGTT GAATGCGTTT GAGCTGATGA AATCGATGAT TGAAGCGGGT
GCTGCGGCGG TTCATTTCGA GGATCAACTG GCATCAGCGA AGAAATGCGG GCACATGGGG
GGCAAAGTGC TGGTGCCGAC GCAGGAAGCC ATTCAGAAAC TGGTTGCGGC GCGTCTGGCG
GCGGATGTCT TGGGTGTGCC GACCTTACTG GTTGCGCGAA CCGATGCGGA TGCAGCGGAT
TTGCTGACTT CCGATTGTGA TGAGTATGAC CGTGATTTCA TCACCGGAGA ACGTACGGTG
GAAGGCTTCT ATCGCACGCG TGCTGGAATT GAGCAGGCAA TCAGCCGCGG TTTGGCCTAC
GCACCGTATG CCGATCTGGT GTGGTGCGAA ACCTCAACGC CGGATTTATC GCTGGCGCGT
CGTTTTGCCG AAGCAATCCA TGCGAAGTTC CCCGGTAAGC TGTTGGCGTA CAACTGTTCA
CCTTCCTTTA ACTGGAAGAA AAATCTGGAT GACAGCACGA TTGCGCGTTT TCAGGATGAG
CTGTCGGCGA TGGGCTATAA GTACCAATTC ATTACGCTGG CTGGCATTCA TAGCATGTGG
TTCAACATGT TTGATCTGGC GCATGCCTAT GCGCAGGGTG AAGGGATGCG GCACTACGTA
GAAAAAGTGC AGCAGCCTGA ATTTGAGGCA ATTAAAGACG GCTATACCTT CTCATCACAT
CAGCAGGAGG TCGGTACCGG CTACTTCGAT AAGGTGACGA ACATCATTCA GGGAGGCGAG
TCTTCAGTGA CGGCGCTGAC GGGATCGACG GAAGAACAAC AGTTCTGA
|
|---|
| Protein sequence | MTTSRTQQVQ HIEKEWKTAR WEGITRPYSA EDVINLRGSV NPECTLAQLG AAKLWNLLHG
DARKGYVNCL GALTGGQALQ QAKAGIEAIY LSGWQVAADA NLASSMYPDQ SLYPANSVPA
VIERINNTFR RADQIQWANH IEPGDKRHTD YFLPIVADAE AGFGGVLNAF ELMKSMIEAG
AAAVHFEDQL ASAKKCGHMG GKVLVPTQEA IQKLVAARLA ADVLGVPTLL VARTDADAAD
LLTSDCDEYD RDFITGERTV EGFYRTRAGI EQAISRGLAY APYADLVWCE TSTPDLSLAR
RFAEAIHAKF PGKLLAYNCS PSFNWKKNLD DSTIARFQDE LSAMGYKYQF ITLAGIHSMW
FNMFDLAHAY AQGEGMRHYV EKVQQPEFEA IKDGYTFSSH QQEVGTGYFD KVTNIIQGGE
SSVTALTGST EEQQF
|
|---|
| |