| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3724 |
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| Symbol | |
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| ID | 8134704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4203296 |
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| End bp | 4204969 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644867024 |
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| Product | cell wall hydrolase/autolysin |
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| Protein accession | YP_003019275 |
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| Protein GI | 253690085 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0816524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAGTC GTATGGTTAC GCTGTTCATC GGCGTATGGC TGTTGCTGGC AGGGGCTGCG
TGGGCAGCGA ATCTGTCGGA CATTAAGGTA GACAATGCCT CAGGTCAGGC CACGGTGCGC
CTGAGCTTTA GCGGTCAGCC TATTTATGCT TTTTTCCCGC TGAGTAACCC TGCCAGAGTG
GTCATTGATA TTCGTCAGAC CGGCGTCATT CAAGGCCTGC CATTGGATTT CAGCGGGCAA
AACCTGATTA AGCGTGTACG TACCAGCAAT GCGCAGGATG CACAAAGCCT GCGTTTGGTG
CTGGATTTGA CTCAGGCGGC TAAAACGCGA GCGGTGACGC AAAAAGAAGG ATCGGGCTAC
GTTGTGGTTT TCACCATCAC CGGTGATAAA GCGAAAACGG TACCAGTCTC AGCGCCTCCG
GCTTCGCGGC AGCAAAATAG CGCACCAGCA GAGCCCGCCA AAAATCCGTT TACCAATAAA
CCTACCGTGG TCGTTAGTAG CAGTTCGTCA TCGACTACCC GCGCGCCGGT TCGGCAGGGG
AATGAACGTG TTGTTGTGGC GATTGATGCC GGTCACGGCG GGCAGGATCC TGGGGCGATT
GGCCCGAACG GTCTGAGGGA GAAAAATGTC ACCATTTCTA TCGCCCGTAA GCTACAAGCC
TTACTGAATA GCGACCCGGC CTTTAAAGGT GTGCTGACGC GTGACGGCGA CTACTTTATT
TCCGTCATGG GACGTTCAGA CGTGGCGCGC AAGCAGGGTG CGAATCTGTT AGTGTCGATT
CACGCGGATG CCGCGCCGAA TCGTAATGCC AAAGGCGCCT CCGTTTGGGT GCTGTCCAAC
CGCCGTGCGA ACAGCGAAAT GGCAAACTGG CTGGAACAGC ACGAGAAACA GTCTGAACTG
TTGGGCGGCG CGGGCGATCT GTTAGCGAAC AGCAGCGCCG ATCCTTATCT CAGCCAGGCG
GTACTGGATC TGCAATTTGG TCACTCCCAG CGTGTGGGAT ATGACGTGGC GACGAAAGTA
CTGCGCGAAC TCCAGCGTGT CGGTGGGCTG CATAAACGAC GCCCAGAGCA CGCCAGTTTA
GGGGTGTTGC GTTCGCCGGA TATTCCTTCT CTGCTGGTGG AGACCGGATT TATCAGTAAC
GTTGCAGAAG AGCGACTGCT GGGCAGTAAC GACTATCAGG AAAAAATCGC CAACGCGATT
TATCAGGGGC TGAGGGGGTA CTTCCAAACG CACCCGATGC AATCCCTCCC AAAGCAGGAA
AGCCGCCCAC TACAGTCGGC GGCAAGTGAT ACCGCAACGT CGAGTGGTAA CGTCAGCACA
GCAAAAGCAA GTGCGGGCAG CACGCGTCAT ACCGTTGCGC GTGGCGAAAC ACTTTCTTCT
ATTGCGCGGC GTTATGGCGT CAGCCTCGCA GCCATGCGTG ATGTGAATAA GCTGAACAAG
GATATCGTCT GGGTTGGACA GCGCCTGAAT ATTCCGGCGA CAGGGACGAA ACAGACGGCA
TCAACCCCAG CGCCCAAAAA GGCAGCGCCA GTGAAGCATA AGGTCGTAAA GGGTGATAGC
CTGAGTGCGA TCGCTGCCCG TTACGGTGTC AGCATGAAAG ATATCCAACA GGCGAATAAT
ATGCGTTCCG GCACGGTACA ACTGGGGCAA ACGCTGATTA TTCCGTCCGC CTGA
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| Protein sequence | MMSRMVTLFI GVWLLLAGAA WAANLSDIKV DNASGQATVR LSFSGQPIYA FFPLSNPARV
VIDIRQTGVI QGLPLDFSGQ NLIKRVRTSN AQDAQSLRLV LDLTQAAKTR AVTQKEGSGY
VVVFTITGDK AKTVPVSAPP ASRQQNSAPA EPAKNPFTNK PTVVVSSSSS STTRAPVRQG
NERVVVAIDA GHGGQDPGAI GPNGLREKNV TISIARKLQA LLNSDPAFKG VLTRDGDYFI
SVMGRSDVAR KQGANLLVSI HADAAPNRNA KGASVWVLSN RRANSEMANW LEQHEKQSEL
LGGAGDLLAN SSADPYLSQA VLDLQFGHSQ RVGYDVATKV LRELQRVGGL HKRRPEHASL
GVLRSPDIPS LLVETGFISN VAEERLLGSN DYQEKIANAI YQGLRGYFQT HPMQSLPKQE
SRPLQSAASD TATSSGNVST AKASAGSTRH TVARGETLSS IARRYGVSLA AMRDVNKLNK
DIVWVGQRLN IPATGTKQTA STPAPKKAAP VKHKVVKGDS LSAIAARYGV SMKDIQQANN
MRSGTVQLGQ TLIIPSA
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