| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3721 |
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| Symbol | hfq |
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| ID | 8134701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4199890 |
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| End bp | 4200189 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644867021 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_003019272 |
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| Protein GI | 253690082 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000253579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAAGG GGCAATCTTT GCAAGATCCG TTCTTGAACG CTTTGCGTCG TGAACGTGTT
CCGGTTTCGA TTTATTTGGT GAACGGTATT AAGCTGCAAG GTCAGATCGA ATCTTTCGAT
CAGTTCGTGA TTTTGTTGAA AAACACGGTA AGTCAGATGG TTTATAAGCA CGCCATCTCT
ACAGTTGTTC CCTCTCGTCC TGTATCTCAC CATAGCAACA ATCCAGGCGG CGGCAGCAAT
TATCACGGTA ACAACACGGC GGCTTCGCAG CAGTCGCAGG AAGCTGATGA CGCCGAATAA
|
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| Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQIESFD QFVILLKNTV SQMVYKHAIS
TVVPSRPVSH HSNNPGGGSN YHGNNTAASQ QSQEADDAE
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