| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3656 |
|---|
| Symbol | nhaR |
|---|
| ID | 8134636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4125018 |
|---|
| End bp | 4125971 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866956 |
|---|
| Product | transcriptional activator NhaR |
|---|
| Protein accession | YP_003019207 |
|---|
| Protein GI | 253690017 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.231756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTATGCC AGAAGCGCCA AGAGGGGGCA GGTGTGTCTC ATTTGAATTT TAATCATCTC
TATTATTTCT GGCAGGTTTA TAAGTCGGGC TCCGTTGCCG GGGCAGCCGA GACGCTGTTC
TTAACGCCGC AGACCATTAC CGGGCAAATC AAATGCCTGG AAGAGCGTCT GCAGGGCAAA
CTCTTCAAGC GTAAAGGGCG GGGGCTGGAA CCGACGGAGC TGGGGCAACT GGTTTTTCGC
TATGCGGATA GCATGTTCCA GCTCAGCCAG GAAATGTTGG ATATTGTGAA CTACCGCAAA
GAATCGAACC TGCTATTCGA TGTCGGTGTG GCAGATGCGT TGTCCAAACG GCTGGTTAGC
AGGGTACTGG AAACAGTCGT GACGGAGCAG GAACATATCC ATTTGCGCTG TTTTGAGTCG
ACGCATGAGA TGCTGCTGGA GCAACTGAGT CAGCATAAGC TCGATATGAT TCTGTCGGAT
TGCCCGGTGG ATTCAACGCA GCAGGAGGGG CTGTTTTCAA TCAAGCTGGG CGAGTGTGGC
GTGAGTTTTT ACTGTAAACG TCCTCAGCCT GAGTATGCTT TTCCGGCTTG CCTTGAAGAA
CGTAAATTGT TGATTCCAGG GCGACGAACC ATGTTGGGAC GGAAACTGCT GAACTGGTTT
ACTGCGCAGA ATATTCAGGT GAACATTTTG GGCGAATTTG ATGATGCAGC GCTGATGACT
GCCTTCGGCA TTAATAATGA TGCGATTTTC GTTGCGCCAT CGCTGTATGC CAATGAGATT
TACCAGCAGG GGGATATCGT CGAGATCGGC AGGATCGAGA ACATTCAGGA CGAGTATTAT
GCGATCTTTG CGGCCAGAAT GATCCAGCAT CCGGCGGTAC AGCGTGTCTG TAACGCAGAT
TTTTCAGCGC TCTTCTGTGA TAGAGCAGAA GGCCTGTCGC GGGCTGATGG ATAA
|
|---|
| Protein sequence | MLCQKRQEGA GVSHLNFNHL YYFWQVYKSG SVAGAAETLF LTPQTITGQI KCLEERLQGK
LFKRKGRGLE PTELGQLVFR YADSMFQLSQ EMLDIVNYRK ESNLLFDVGV ADALSKRLVS
RVLETVVTEQ EHIHLRCFES THEMLLEQLS QHKLDMILSD CPVDSTQQEG LFSIKLGECG
VSFYCKRPQP EYAFPACLEE RKLLIPGRRT MLGRKLLNWF TAQNIQVNIL GEFDDAALMT
AFGINNDAIF VAPSLYANEI YQQGDIVEIG RIENIQDEYY AIFAARMIQH PAVQRVCNAD
FSALFCDRAE GLSRADG
|
|---|
| |