Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3630 |
Symbol | |
ID | 8134610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4097922 |
End bp | 4098575 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644866930 |
Product | pseudouridine synthase |
Protein accession | YP_003019181 |
Protein GI | 253689991 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.146108 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACCCT ATAATCCGCC TACCGATCCC TGGTTGCATA TTCTTTACCA GGATCAGCAC ATCATGGTGG TGAATAAACC CAGCGGTCTG CTGTCGGTTC CCGGCCGTGC GCCAGAACAC AAAGACAGCG TCATGAGCCG CATTCAGGCT GACTATCCAA CGGCCGAATC CGTTCATCGT CTGGATATGG CGACCAGCGG CGTGATCGCC GTCGCACTCA CGAAAGCCGC TGAGCGCGAA TTAAAGCGCC AGTTTCGCGA GCGCGAACCG AAGAAATCCT ACCTTGCCCG CGTCTGGGGG CATATGGAGC AGGATGAAGG CGTCATCGAT CTGCCGCTGA TCTGCGACTG GCCGAACCGT CCAAAACAGA AAGTCTGCTT TGAAACAGGC AAAGCGGCAC AGACGGAGTA TCAGGTGCTC TCGCGTGACG ATGACGGTAC AACACGCGTC AAGCTGATGC CGATTACCGG TCGCTCTCAT CAATTGCGCG TCCATCTGCT GGCACTTGGC CACCCAATCC TCGGCGATGG CTTTTATGCG CATCCTGATG CTAAAGCGAT GGCGCCCCGC CTGTTACTGC ACGCACAAGA ACTGGCAATT ACGCACCCTG AGTTCAATAC CCCGATGCAC TTTCGTTGCG AAGCGGATTT CTGA
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Protein sequence | MEPYNPPTDP WLHILYQDQH IMVVNKPSGL LSVPGRAPEH KDSVMSRIQA DYPTAESVHR LDMATSGVIA VALTKAAERE LKRQFREREP KKSYLARVWG HMEQDEGVID LPLICDWPNR PKQKVCFETG KAAQTEYQVL SRDDDGTTRV KLMPITGRSH QLRVHLLALG HPILGDGFYA HPDAKAMAPR LLLHAQELAI THPEFNTPMH FRCEADF
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