Gene PC1_3630 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3630 
Symbol 
ID8134610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4097922 
End bp4098575 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content56% 
IMG OID644866930 
Productpseudouridine synthase 
Protein accessionYP_003019181 
Protein GI253689991 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.146108 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCCT ATAATCCGCC TACCGATCCC TGGTTGCATA TTCTTTACCA GGATCAGCAC 
ATCATGGTGG TGAATAAACC CAGCGGTCTG CTGTCGGTTC CCGGCCGTGC GCCAGAACAC
AAAGACAGCG TCATGAGCCG CATTCAGGCT GACTATCCAA CGGCCGAATC CGTTCATCGT
CTGGATATGG CGACCAGCGG CGTGATCGCC GTCGCACTCA CGAAAGCCGC TGAGCGCGAA
TTAAAGCGCC AGTTTCGCGA GCGCGAACCG AAGAAATCCT ACCTTGCCCG CGTCTGGGGG
CATATGGAGC AGGATGAAGG CGTCATCGAT CTGCCGCTGA TCTGCGACTG GCCGAACCGT
CCAAAACAGA AAGTCTGCTT TGAAACAGGC AAAGCGGCAC AGACGGAGTA TCAGGTGCTC
TCGCGTGACG ATGACGGTAC AACACGCGTC AAGCTGATGC CGATTACCGG TCGCTCTCAT
CAATTGCGCG TCCATCTGCT GGCACTTGGC CACCCAATCC TCGGCGATGG CTTTTATGCG
CATCCTGATG CTAAAGCGAT GGCGCCCCGC CTGTTACTGC ACGCACAAGA ACTGGCAATT
ACGCACCCTG AGTTCAATAC CCCGATGCAC TTTCGTTGCG AAGCGGATTT CTGA
 
Protein sequence
MEPYNPPTDP WLHILYQDQH IMVVNKPSGL LSVPGRAPEH KDSVMSRIQA DYPTAESVHR 
LDMATSGVIA VALTKAAERE LKRQFREREP KKSYLARVWG HMEQDEGVID LPLICDWPNR
PKQKVCFETG KAAQTEYQVL SRDDDGTTRV KLMPITGRSH QLRVHLLALG HPILGDGFYA
HPDAKAMAPR LLLHAQELAI THPEFNTPMH FRCEADF