Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3622 |
Symbol | |
ID | 8134602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4085210 |
End bp | 4086832 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866922 |
Product | Xylan 1,4-beta-xylosidase |
Protein accession | YP_003019173 |
Protein GI | 253689983 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.573352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGTGT CCCGGCTGAT AGGGAAGGGT GTATTGAGCG GTATCTTACT GATGGCAATG GGTATCGGTC AGGCAATGGC CTGTCAGGCT GGCCCTGCTA ACGAATGGAA ACGGGGTATT GAACAGCAGC GTCAGGCGGA TTTGGGCAAT GGCTGTTATC TCAATCCGAT TATTGCGGGC GATCATCCCG ACCCTACGAT TATCAAGGAT GGGGATGACT ACTACATGAC GTTCTCGTCA TTTGACGATA TCCCCGGACT GCTGATTTGG CACTCGCGCG ATTTAGTGAA CTGGCAGCCG CTTGGCCCGG CGATCGCGAC GCCCGTTGAC GCGATCTGGG CACCGGATTT GGTGAAACAC GACGGCAAAT ATTATATCTA CTTCACCACC AACCGGATTA TCGACGCCAA AGGAACGAAA AAGAAAACGC TGTATGTGAT TACCGCCGAT GATATTCGCG GCCCGTGGAC GCCGCCGAAG GATACGGGCT TGAAAAATCC GGCCAGCGAT CCCGGTCATG TGGTGGGAGA GGACGGTAAA CGTTACATCT TTATGTCTGG CGGCAATCGC GTGCAGTTAA CCGATGACGG GCTGTCGACG GTCGGCGACA TGGAGGTGGT CTATCAGGGG TGGCAATACC CGGAAGAGTG GGATGTGGAA AGCTTCTCGC AGGAAGGGCC GAAGATGCTG CGCCACGGCG ACTATTTCTA CATGGTACTG GCGGAAGGCG GAACGGCGGG GCCGCCGACC GGACACATGG TGATTGCTGC GCGTTCCAAA TCGATCAACG GGCCGTGGGA AAATTCCCCG CATAACCCGA TTATTCGCAC GCAGGATCGT TCAGAAAAGT GGTGGTCACG CGGCCATGCG ACGCTGATCG AAGGGCCGGA TAAAAACTGG TACATGGTGT ATCACGGTTA TGAAAACGGC TTTATGACGC TGGGGCGGCA GGCGATGTTG GAGCCGATCG TCTGGGGCAA TGATGGCTGG TTTACGTCTG CCGGGTTTGA TACCGGTAAA CCGATTCGCA AACCGGCAGG GGGCGAAGCG GTGCCGCACG GTATTGGCTG GTCTGATAGC TTTACCGACG AGAAATTTCC GGCTCGCTGG CATTTTTACC GCGCCAATGC GGAAGAACTG AAACGGGTTA CGCTCAGCGA CGGCAAACTG CATCTTAAGG CAAAAGGCAC ATCGCCAAAA GACAGTGCGC CGTTGACGAT GATCCCCGGC GATCAGGCTT ACCAAATTGA GGTTACGGCG AATTTCGCCC CTGGCGCGCA GGCTGGCCTA CTGCTGTTCT ACAACGCGAA GCTGTATGTC GGGCTGTCGT TTAATCAGGA TGGTACTGTC ATGCACCGCT ATGGGCTGGA AAGGGCGGAG AAGAAACTGC CACACATTAC AGGCAATGAG GTGCAGATTC TGATGAGAAA CGATCGCCAT ATCGTGACGT TTTACACCCG AACGTCGGCT CAGGAACCGT GGAAGAAATA CCCGGTGCAG ATGGAGGTAT CCGGCTACCA TCACAATGTC GCGTATGACT TCCTCAGCTT ACGGCCCGCC TTGTATGCGT CGGGTGAGGG AGACGTGACG TTCAGCAACC TGCGTTATCA GGCGTTGCCT TAA
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Protein sequence | MGVSRLIGKG VLSGILLMAM GIGQAMACQA GPANEWKRGI EQQRQADLGN GCYLNPIIAG DHPDPTIIKD GDDYYMTFSS FDDIPGLLIW HSRDLVNWQP LGPAIATPVD AIWAPDLVKH DGKYYIYFTT NRIIDAKGTK KKTLYVITAD DIRGPWTPPK DTGLKNPASD PGHVVGEDGK RYIFMSGGNR VQLTDDGLST VGDMEVVYQG WQYPEEWDVE SFSQEGPKML RHGDYFYMVL AEGGTAGPPT GHMVIAARSK SINGPWENSP HNPIIRTQDR SEKWWSRGHA TLIEGPDKNW YMVYHGYENG FMTLGRQAML EPIVWGNDGW FTSAGFDTGK PIRKPAGGEA VPHGIGWSDS FTDEKFPARW HFYRANAEEL KRVTLSDGKL HLKAKGTSPK DSAPLTMIPG DQAYQIEVTA NFAPGAQAGL LLFYNAKLYV GLSFNQDGTV MHRYGLERAE KKLPHITGNE VQILMRNDRH IVTFYTRTSA QEPWKKYPVQ MEVSGYHHNV AYDFLSLRPA LYASGEGDVT FSNLRYQALP
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