| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3607 |
|---|
| Symbol | |
|---|
| ID | 8134587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4068219 |
|---|
| End bp | 4069817 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866907 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_003019158 |
|---|
| Protein GI | 253689968 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AAGTCATTAT TTTTGATACC ACATTACGCG ATGGTGAACA GGCTTTACAG
GCGAGTCTGA GTGTAAAAGA AAAACTGCAA ATTGCCTTCG CTCTGGAGCG TATGGGCGTT
GATGTCATGG AAGTTGGCTT TCCTGTGTCC TCTCCCGGCG ATTTTGAATC CGTTCAGACC
ATTGCCCGCA ATATCAAAAA CAGTCGTGTG TGTGGCCTGA CCCGCTGCGT CGAAAAGGAT
ATCGATGTTG CCGCAGAAGC GCTGCGTGTC GCAGAAGCCT TCCGTATTCA CACTTTTATC
GCAACCTCAC CGATGCACAT CGCTACTAAG CTGCGCAGCA CGCTGGACGA AGTCATCGAA
CGCGCTATCT ACATGATTAA GCGCGCGCGT AACTACACAG ACGATGTCGA GTTCTCCTGT
GAAGATGCGG GTCGTACGCC AATCCCAGAT CTGTGTCGCG TGGTTGAGGC CGCCATCAAC
GCCGGTGCTC GTACCATTAA TATCCCGGAC ACCGTCGGCT ACACCATGCC GCATGAGTTC
GGCAACATCA TCTCCTCTTT GTACCAACAC GTTCCTAATA TCGATAAAGC CATTATTTCT
GTTCACACCC ATGACGATCT GGGTTTGGCC GTTGGCAACG CCATGGCGGC AGTGCACGCA
GGCGCTCGTC AGGTAGAAGG CACATTGAAC GGTATCGGCG AGCGTGCTGG TAACTGTTCA
CTGGAAGAAG TCATCATGGC GATCAAAACC CGCCATAACA TCCTGAATGT GCATACCAAT
ATCAATCATC AGGAAATCTA TCGCACCAGC CAGTTGGTCA GCCAGATTTG TAATATGCCT
ATCCCTGCTA ACAAAGCGGT TGTGGGGGCC AATGCCTTCG CCCACTCTTC CGGTATTCAC
CAGGATGGCG TGCTGAAGAA CCGTGAAAAC TACGAAATCA TGACGCCGGA ATCCATCGGC
CTGAAAGAAG TACAGTTGAA CCTGACTTCC CGTTCTGGTC GTGCCGCGGT GAAACATCGT
ATGGAAGAGA TGGGCTATCA GGATAGCGAT TACAATCTGG ACGATCTGTA CTCCGCCTTC
CTGAAACTGG CAGATAAGAA AGGTCAGGTC TTTGATTACG ATCTGGAGGC GCTGGCCTTT
ATCAACCGTC AGCAGGAAGA GCCAGAGTTC TACCATCTGG ATTATTTCAG CGTCCAGTCT
GGTTCCAGCG TAATGGCAAC CGCTTCTGTC AAACTGATCT GCGGCGAAGA AACCCAATCA
GAAGCTGCAA CGGGGAATGG CCCGGTAGAT GCCGTCTATC AGGCAATCAA CCGCATTACG
GGCTATCAGG TTTCGCTGGT TAAATACCAA CTGACCGCCA AAGGCCAGGG TCGTGATGCG
CTGGGTCAGG TTGATATTGT TGCGGATTAT CAGGGCCGCC GTTTCCACGG CGTCGGTCTG
GCGACGGATA TCGTTGAATC TTCCGCACAG GCAATGGTAA ATGTATTAAA CAACATCAAG
CGTGCTCAGC AGGTAGAAAA AGAAATTCAA CGTCTGCAGC AGCACAATAA CCAACAACAA
AACGATAGCA AACAACAAAA CAGTCAGGAA ACAGTGTGA
|
|---|
| Protein sequence | MSEQVIIFDT TLRDGEQALQ ASLSVKEKLQ IAFALERMGV DVMEVGFPVS SPGDFESVQT
IARNIKNSRV CGLTRCVEKD IDVAAEALRV AEAFRIHTFI ATSPMHIATK LRSTLDEVIE
RAIYMIKRAR NYTDDVEFSC EDAGRTPIPD LCRVVEAAIN AGARTINIPD TVGYTMPHEF
GNIISSLYQH VPNIDKAIIS VHTHDDLGLA VGNAMAAVHA GARQVEGTLN GIGERAGNCS
LEEVIMAIKT RHNILNVHTN INHQEIYRTS QLVSQICNMP IPANKAVVGA NAFAHSSGIH
QDGVLKNREN YEIMTPESIG LKEVQLNLTS RSGRAAVKHR MEEMGYQDSD YNLDDLYSAF
LKLADKKGQV FDYDLEALAF INRQQEEPEF YHLDYFSVQS GSSVMATASV KLICGEETQS
EAATGNGPVD AVYQAINRIT GYQVSLVKYQ LTAKGQGRDA LGQVDIVADY QGRRFHGVGL
ATDIVESSAQ AMVNVLNNIK RAQQVEKEIQ RLQQHNNQQQ NDSKQQNSQE TV
|
|---|
| |