| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3566 |
|---|
| Symbol | |
|---|
| ID | 8134546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4018847 |
|---|
| End bp | 4020271 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644866866 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_003019117 |
|---|
| Protein GI | 253689927 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTG AAATTAAAGC TCAGGTAGTG GTACTTGGTG CCGGCCCCGC GGGTTACTCT
GCTGCATTCC GCGCGGCGGA TTTGGGTCTG GAAACCGTAC TGGTAGAGCG CTACTCCACG
CTGGGTGGGG TGTGTCTGAA TGTTGGCTGT ATTCCTTCCA AAGCCCTGCT GCACGTTGCT
AAAGTCATTG AAGAAGCTAA AGCGCTGGCG GAACACGGTA TCGTGTTCGG TGAACCTAAA
ACCGACATTG ATAAAATCCG TCTGTGGAAA GAAAAAGTCA TCACCCAACT GACCGGTGGT
CTGGCTGGTA TGGCGAAAGG CCGTAAAGTT AAAGTCGTTA ACGGTCTGGG CAAATTTACC
GGTGCTAACA CGCTGGAAGT TGACGGTGAA AACGGCAAAA CGACGATCAA CTTCGATAAC
GCCATTATCG CTGCGGGTTC ACGTCCGATC CAACTGCCTT TCATTCCTCA TGATGACCCA
CGCGTATGGG ATTCTACCGA TGCGCTGGAG CTGAAAAATG TCCCAGGACG TCTTCTGGTT
ATGGGCGGCG GTATCATCGG TCTGGAAATG GGTACCGTTT ACCACGCTCT GGGTTCACAG
ATTGACGTTG TTGAAATGTT CGATCAGGTG ATTCCGGCAG CTGACAAAGA CATCATCAAA
GTCTTCACCA AACGTATCAG CAAGCAGTTC AATCTGATGC TGGAAACCAA AGTGACGGCG
GTAGAAGCCA AAGAAGACGG CATCTATGTG ACGATGGAAG GTAAAAAAGC GCCAGCCGAA
CCACAGCGTT ACGACGCGGT TCTGGTCGCT ATCGGCCGTG TGCCGAACGG CAAAAACCTG
GATGCTGGCA AAGCAGGCGT GGAAGTTGAC GATCGCGGCT TCATCCATGT TGATAAGCAA
ATGCGCACCA ACGTGCCGCA CATCTACGCT ATCGGCGACA TCGTCGGTCA GCCGATGCTG
GCGCACAAAG GCGTGCATGA AGGCCACGTT GCTGCTGAAG TCATCTCCGG TAAGAAACAC
TACTTCGATC CGAAAGTAAT TCCTTCTATT GCCTATACCG AACCGGAAGT GGCATGGGTG
GGTCTGACTG AGAAAGAAGC GAAAGAGAAA GGCATCAGCT ACGAAACCGC GACCTTCCCA
TGGGCGGCGT CTGGCCGTGC GATCGCGTCT GACTGCGCTG ACGGTATGAC CAAACTGATT
TTCGACAAAG AAACTCACCG TGTTATTGGT GGTGCGATTG TCGGTACTAA CGGTGGTGAA
CTGTTAGGTG AAATCGGTCT GGCGATCGAA ATGGGCTGTG ATGCGGAAGA TATCGCGTTG
ACCATCCATG CGCACCCAAC GCTGCATGAG TCTGTTGGTC TGGCTGCTGA AATTTTTGAA
GGTAGCATCA CCGACCTGCC GAACCCGAAA GCGAAGAAGA AGTAA
|
|---|
| Protein sequence | MSTEIKAQVV VLGAGPAGYS AAFRAADLGL ETVLVERYST LGGVCLNVGC IPSKALLHVA
KVIEEAKALA EHGIVFGEPK TDIDKIRLWK EKVITQLTGG LAGMAKGRKV KVVNGLGKFT
GANTLEVDGE NGKTTINFDN AIIAAGSRPI QLPFIPHDDP RVWDSTDALE LKNVPGRLLV
MGGGIIGLEM GTVYHALGSQ IDVVEMFDQV IPAADKDIIK VFTKRISKQF NLMLETKVTA
VEAKEDGIYV TMEGKKAPAE PQRYDAVLVA IGRVPNGKNL DAGKAGVEVD DRGFIHVDKQ
MRTNVPHIYA IGDIVGQPML AHKGVHEGHV AAEVISGKKH YFDPKVIPSI AYTEPEVAWV
GLTEKEAKEK GISYETATFP WAASGRAIAS DCADGMTKLI FDKETHRVIG GAIVGTNGGE
LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEIFE GSITDLPNPK AKKK
|
|---|
| |