| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3555 |
|---|
| Symbol | |
|---|
| ID | 8134535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4004310 |
|---|
| End bp | 4005710 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644866856 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003019107 |
|---|
| Protein GI | 253689917 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1690] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.771976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAT TCACTCGTTT ACAAAAACGT TTATCCCGTT TGGGGATAGA CACCGATTAC
CAACATTCTA TTTATCATCT TCGCAGGCAG CATGCAGAAG CGCAGGTTCT GTTGCCGGAA
GCGTTGCCGC TGGAAGAAAA GGCGGTTCAG CAACTGCTGG ATTTCGCCTC AGTACACCTA
CCGGGTAGCG ATGCGCACGT CTGCGCCGCT CGCGCGACGC CGGATTTCCA CCCCGGCACG
CTTGCGCCCG TCGGCAGCAT TGTTGCCACT ACGGAGAACT TTGTTATCCC TGCGGCGATT
GGGACCGATA TCAACTGCGG GATGCGCTTG CTGACGACGG GCGTACATCA TACTGATGCT
GACGTACATA AACCGGCGCT GATTCAGGCG CTCAAGAACA CATTGCTGCT GGATCAGCGT
GATGTTCCTG TGACGCCGGA TTCGTTTTCC GCACTCTTTG ATGAAGGACT CTCGGCATGG
CTTGCGGCGC TGCCCTTGCA GGGGCTCTGG CAGGACGTAG ACTTCCGACG CTTGTCGGCG
GAACTTGCCT CCATTGCTGG AACTGAGGCG GTTCGCGCCG ATAGTCGACA TGCGCCTGAA
CCGTTTTTTG CACCGCGCGA GATTCTGCGG CCTTCCAGTC TGGGTACGGT CGGGTCGGGT
AACCATTTCG TTGAGCTGCA AATTGTCGAT GCGGTTTTGG ATCGGCATGC GGCGTATCAG
GCTGGCGTAC AAGAAGGTGA AGTCGTCATT ATGATTCATA CCGGTTCACG GGACGTGGGC
TTTTATGTCG GCCAGCGTGG GATCGATAAA GCGCGAGCCT GCTGGCCTGC GGGAGAAAAA
TACCCGGCGT CCGGCCTGTT TGGTCTGGTT GATGAGCAGG CGACAGACTA TATGGAAGCG
ATGGGCGTTG CTGCCCGCTA TGCGTGGATC AACCGGATCG TGTTGACTGA ACTGATTCGT
TCCTCCTGGA AGCAGGTGTT TACGCGGGAT ACCAGCAAGC TGGTGGTCGA TCTCTCGCAT
AACATTATTC TGCCGGAGCA CGGAATGAAC CTGCATCGCA AAGGCGCGAC GCCTGCCAAA
GCCGGAGAAT TCGCGCTGAT CCCCGGCTCA ATGGGGGACT ACTCTTATCT TGTCACTGGG
AAGGGGAACC CTGATTGGCT GTGGTCGTGT TCACACGGCG CAGGGCGTGC CGAACGTCGG
CAAAGTATGC GCAATAAGGT CGATACGGCG AAGTCGGCAG AGACGTTGCC CTGGCAATGC
ATTACGCTGA AGGATGAGCG CCTGCGGGAA GAAGCGCCGG CGGCTTATAA GCCGGTTACG
CCTGTGATTG ATATTCAGGA ACAGTCAGGA CTGATTCAAC CCGTGGCACG GCTGCGACCG
TGGCTGACGT TTAAGGCCTG A
|
|---|
| Protein sequence | MSTFTRLQKR LSRLGIDTDY QHSIYHLRRQ HAEAQVLLPE ALPLEEKAVQ QLLDFASVHL
PGSDAHVCAA RATPDFHPGT LAPVGSIVAT TENFVIPAAI GTDINCGMRL LTTGVHHTDA
DVHKPALIQA LKNTLLLDQR DVPVTPDSFS ALFDEGLSAW LAALPLQGLW QDVDFRRLSA
ELASIAGTEA VRADSRHAPE PFFAPREILR PSSLGTVGSG NHFVELQIVD AVLDRHAAYQ
AGVQEGEVVI MIHTGSRDVG FYVGQRGIDK ARACWPAGEK YPASGLFGLV DEQATDYMEA
MGVAARYAWI NRIVLTELIR SSWKQVFTRD TSKLVVDLSH NIILPEHGMN LHRKGATPAK
AGEFALIPGS MGDYSYLVTG KGNPDWLWSC SHGAGRAERR QSMRNKVDTA KSAETLPWQC
ITLKDERLRE EAPAAYKPVT PVIDIQEQSG LIQPVARLRP WLTFKA
|
|---|
| |