Gene PC1_3517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3517 
Symbol 
ID8134497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp3962101 
End bp3962532 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content56% 
IMG OID644866818 
Productalkylhydroperoxidase like protein, AhpD family 
Protein accessionYP_003019069 
Protein GI253689879 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00778] alkylhydroperoxidase AhpD family core domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACGC TTCGTTTGCC CTACCAAACC CTCTCGCCAG AAGCCTATCA AGGGTTCGGC 
ATTGCCAAGA AAGCGCTGAA CAAGAGCAGC CTTGGCAAAC CGTTGATCGA ATTGGTCTAT 
TTGCGTGTTT CACAAATTAA TGGCTGCGCT TTTTGTCTGG AGATGCATGC GTCGGCTTTG 
CGTACAGACG GCGTGCCGGA TGCCAAGCTG GACAGCCTGG CGGGCTGGCG TGTGAGCGCG 
CAGTTCAATG AACGTGAGCG TGCGGCGCTG GCCTGGACTG AATCTCTTGT GGATGTGGCC 
CACAGCCACG CGCCTGATGA AGATTTCGAA CCGCTGAAGG CGCATTTCAG CGATGCAGAG 
ATCGCCGATC TGAGCTTTGC CGTTGCGCTG ATGAGTGCCT TTAATCGGTT GGCGATCGGC 
ATGCGCCAAT AA
 
Protein sequence
MSTLRLPYQT LSPEAYQGFG IAKKALNKSS LGKPLIELVY LRVSQINGCA FCLEMHASAL 
RTDGVPDAKL DSLAGWRVSA QFNERERAAL AWTESLVDVA HSHAPDEDFE PLKAHFSDAE 
IADLSFAVAL MSAFNRLAIG MRQ