| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3506 |
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| Symbol | |
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| ID | 8134486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3950812 |
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| End bp | 3951291 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644866807 |
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| Product | type VI secretion system effector, Hcp1 family |
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| Protein accession | YP_003019058 |
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| Protein GI | 253689868 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAATT TGATTTATGC CAGCATTAAT GGCCAAAAAC AGGGTTTAAT ATCATCTGGT
TGCTCAACGC TAGATTCGAT TGGTAATCGC TACCAAACGG GTCATGAAGA TCAAATACAA
GTATTAGGTT TAAACCATAG CATCAGCCGC GATCAGAATG TCGCCCATCA TCCGATTCAT
TTTATTAAGC CAATCGATAA ATCGTCCCCA TTATTAGGGA TGGCAATCTC TTATAATGAA
AAGGTCGATG TCACATTTTA TTTCTATCGT GTCAATTCCG CTGGGCAGTT AGAGCTTTAT
TACGAAGTGA CCTTAACCGA TGCGAGCATT GTCGACGTCA CCTGTGTCTA TCCACACGTC
ATCGATAACA ACGACATCAT GCCGTATGAA AAAGTCCAGC TAAAATATAA AACCATAGCC
TGGAACCACA AAATCGCAGG AACGTCGGGT TACAGTATTT GGGAGGAAAT GAGCCTCTAA
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| Protein sequence | MANLIYASIN GQKQGLISSG CSTLDSIGNR YQTGHEDQIQ VLGLNHSISR DQNVAHHPIH
FIKPIDKSSP LLGMAISYNE KVDVTFYFYR VNSAGQLELY YEVTLTDASI VDVTCVYPHV
IDNNDIMPYE KVQLKYKTIA WNHKIAGTSG YSIWEEMSL
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