Gene PC1_3499 details

Gene Information

• Locus tag: PC1_3499
• Symbol: alr
• ID: 8134479
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 3943953
• End bp: 3945035
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 644866800
• Product: alanine racemase
• Protein accession: YP_003019051
• Protein GI: 253689861
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0787] Alanine racemase
• TIGRFAM ID: [TIGR00492] alanine racemase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACGG CAACTGCCGT CATTAACCGG CGTGCTTTGC GCCACAACCT GCAACGTATC 
CGTCAGCTCG CGCCTGACAG TCAGGTCGTT GCCATCGTGA AAGCCAACGC CTACGGCCAC 
GGCATGATCG AAGCTGCCCA TACCTTTTGC GACGCTGACT GCTACGGCGT CGCACGGCTC 
TCCGAGGCGC TGGCGTTGCG CGCGGCGGGC ATCACCAAGC CTATCGTCCT GCTGGAGGGC 
TTTTTCTCCG CCGACGACCT CCCGCTTCTG GTAGAGCACC AGCTAGAAAC CGCCGTTCAC 
AGCCCCGAAC AGCTTGCCGC GCTGGAGCAG GCTACGCTGT CACAGCCGCT ACGCGTGTGG 
ATGAAGCTCG ATACCGGTAT GCACCGGCTT GGCGTTCTGC CGGAACACGC CGACGCGTTT 
TGGCAGCGTT TGACCGCATG TCGCAATGTG GTTCAGCCGG TCAATATCAT GAGCCACTTT 
TCCCGTGCCG ATGAGCCCGA GGCCGGAACT ACCGAGCGCC AGTTGACCTG CTTCGATGCC 
TTTACACAGG GTAAACCCGG CGCACAGTCC ATCGCTGCCT CCGGCGGCAT TTTGCTGTGG 
CCACAGTCGC ACCGCGATCG CGTCCGCCCC GGCATCATTC TCTATGGCGT GTCGCCGTTG 
GATAACGAAG ACGCCGCACA TTTTGGCTTT CAGCCAGCAA TGACTTTTAC GTCTCACCTG 
ATCGCCGTGC GTGAACACCA CACGGGCGAA GCGGTCGGTT ACGGCGGCAC CTGGACCAGC 
CCGCGCAATA CCCGTTTGGG CGTCGTGGCC GTCGGCTATG GCGATGGCTA TCCGCGCTGC 
GCACCAGCCG GCACGCCCGT GCTCATCAAC GGGCGTGAGG TGCCACTTTC CGGCCGCGTG 
TCGATGGATA TGATTACGGT GGATTTAGGG CCGGATGCGC AGGATAAGGT TGGCGATGAA 
GTCATCCTGT GGGGACCGAC GTTACCGGTT GAACGCATTG CCGCGCATAC AGGCGCCAGC 
GCCTACGAAC TGATCACGCG CTTAACGCAG CGCACCGCGT TGGAATACGT CGACGGTGAG 
TAA 

 

Protein sequence

MKTATAVINR RALRHNLQRI RQLAPDSQVV AIVKANAYGH GMIEAAHTFC DADCYGVARL 
SEALALRAAG ITKPIVLLEG FFSADDLPLL VEHQLETAVH SPEQLAALEQ ATLSQPLRVW 
MKLDTGMHRL GVLPEHADAF WQRLTACRNV VQPVNIMSHF SRADEPEAGT TERQLTCFDA 
FTQGKPGAQS IAASGGILLW PQSHRDRVRP GIILYGVSPL DNEDAAHFGF QPAMTFTSHL 
IAVREHHTGE AVGYGGTWTS PRNTRLGVVA VGYGDGYPRC APAGTPVLIN GREVPLSGRV 
SMDMITVDLG PDAQDKVGDE VILWGPTLPV ERIAAHTGAS AYELITRLTQ RTALEYVDGE