| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3426 |
|---|
| Symbol | |
|---|
| ID | 8134406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3873936 |
|---|
| End bp | 3875603 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866727 |
|---|
| Product | indolepyruvate decarboxylase |
|---|
| Protein accession | YP_003018978 |
|---|
| Protein GI | 253689788 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | [TIGR03393] indolepyruvate decarboxylase, Erwinia family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.310622 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA ACTACACAGT GGGCGATTAT TTATTGGATC GTCTGGCACA GATCGGTATT
CAGCACCTCT TCGGCGTACC GGGCGACTAC AACCTGCATT TTCTCGATCA TGTTATCAGC
CATCCAGAGG TGACCTGGGT GGGCTGCGCA AATGAGTTAA ACGCCGCTTA TGCCGCCGAT
GGCTATGCGC GATGCCGTCC GGCAGCGGCA CTGCTCACCA CCTTCGGCGT AGGCGAACTC
AGCGCGATTA ACGGTATTGC AGGCAGCTAC GCGGAATTCC TGCCTGTTAT TCACATCGCC
GTTGCGCCCA GCCTCGCGTC ACAACGCAAC GGCGAATTAC TTCACCACAC TCTAGGCGAT
GGCGATTTTA GCCACTTTTT CCACATGGCT GCGGAAGTCA CCGCTGCACA GGCCAGCCTC
ACCGTCGAAA ACGCAGCCAC AGAAATCGAC AGAGTGATTA GAGAAGCACT TTCTCAGCAC
AAACCGGTCT ATCTATTTCT GCCATTGGAC GTGGCTGCGG CACCAGTCGG CGCACAGCCA
CACCCGCTTA CGCTTCCTGA ACCACTCTGC TCTGATGATT CACTGCAGGC CTTTATCACC
GCAGCCACCG CGATGCTAAG CAAAGCCAAC ACGGTCTCAT TGCTAGCTGA CTTTCTGGCT
CAGCGCATGG GCGTCGCAGA ACAACTCCAA CACTGGATCG ATAACACGCC GTTCCCCCAC
GCCACCTTGT TGATGGGAAA AGGCACGCTA AACGAACAGC ATCGCAACTT TACCGGCACC
TACTCAGGTG GCGGCAGTGA CGAAGCGATT CGGGCACATA TCGAAGATGC GGATGTCATC
ATCAGCGTTG GCGTGCGCTA CACCGATACG ATTACGACGG GATTCAGCCA TCAGATTGCC
TGTGAAAAAA ATATCGACAT CCAGCCAACA TTGGCTCGCG TCGGCAGCCA GGTTTTCCCC
TCAATTCCAA TGTCAGACGC TATCGCCGCG CTGGAAAACA TCACCGCAAC ACTGGCGTCC
CGTTGGGATC ACCGCACGAT TACAGCCCCG GCCTTACCGC AGTCAGAGCA AAAAGACACG
CTCAATCAGT GCGAGTTTTG GCAACAGATT CAGCATTTCC TCCGTCCCGG CGATATTCTT
GTGACCGATC AGGGCACCTC ATGTTTTGGC GCCGCCACAC TCCGGTTGCC GAAGGACTGC
CAGTTCATCG TTCAATCGCT GTGGGGCTCA ATAGGCTACT CTCTACCGGC TGCATTCGGT
GCACAAATTG CCGAACCGAA CCGGCGCGTA GTGCTGTTGA TCGGCGATGG CTCACTTCAG
CTTACCGTAC AAGAGCTTGG CTCTATCATT CGCGATCGCT TGAATATGGT CATTGTGGTG
ATGAATAACG AGGGCTACAC CGTCGAACGG GCGATTCACG GCCCTGAACA GCGCTACAAC
GATATCGCCG CCTGGAACTG GACACAGCTT CCCGCCGCGT TAGGCGCGAA TGAAAACGAA
ATACTCTGCG AACAGGTTTG CTCACCGACG GCTCTCGCAC AGACGCTCAA ACAGGTGAAC
GCGGAATCTC GCTTGTCGCT CATCGAGGTC GTGTTGCCGA AAATGGATAT TCCCGCGCTT
TTACACACCA TCACACAGTC GCTTGAGACC CGCAATACCG TGCAGTAG
|
|---|
| Protein sequence | MNENYTVGDY LLDRLAQIGI QHLFGVPGDY NLHFLDHVIS HPEVTWVGCA NELNAAYAAD
GYARCRPAAA LLTTFGVGEL SAINGIAGSY AEFLPVIHIA VAPSLASQRN GELLHHTLGD
GDFSHFFHMA AEVTAAQASL TVENAATEID RVIREALSQH KPVYLFLPLD VAAAPVGAQP
HPLTLPEPLC SDDSLQAFIT AATAMLSKAN TVSLLADFLA QRMGVAEQLQ HWIDNTPFPH
ATLLMGKGTL NEQHRNFTGT YSGGGSDEAI RAHIEDADVI ISVGVRYTDT ITTGFSHQIA
CEKNIDIQPT LARVGSQVFP SIPMSDAIAA LENITATLAS RWDHRTITAP ALPQSEQKDT
LNQCEFWQQI QHFLRPGDIL VTDQGTSCFG AATLRLPKDC QFIVQSLWGS IGYSLPAAFG
AQIAEPNRRV VLLIGDGSLQ LTVQELGSII RDRLNMVIVV MNNEGYTVER AIHGPEQRYN
DIAAWNWTQL PAALGANENE ILCEQVCSPT ALAQTLKQVN AESRLSLIEV VLPKMDIPAL
LHTITQSLET RNTVQ
|
|---|
| |