| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3396 |
|---|
| Symbol | |
|---|
| ID | 8134376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3834588 |
|---|
| End bp | 3835940 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866697 |
|---|
| Product | Glucarate dehydratase |
|---|
| Protein accession | YP_003018948 |
|---|
| Protein GI | 253689758 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACT TTTCAGCGAC TCCCGTAATT GCCGACATGA AAGTCATTCC CGTCGCGGGC
TATGACAGCA TGCTGTTGAA CATCGGGGGG GCACATGGTG CTTACTTCAC CCGTAACCTT
GTTATTTTAA CTGACAGCGC CGGACATACC GGTGTCGGCG AAGCGCCTGG TGGTGAGGTT
ATTTACAACA CGCTGGTTGA AGCGATTCCT CGTGTGAAAG GCGAACAAAT CGCCCGTATG
AACCGTCTGG TTCATGACAT TCATGTCGGC AACCAATCTT CTGATTTTGA TTCCTTCGGC
AAGGGTGCCT GGACGTTTGA GCTGCGAGTG AATGCGGTGG CAGCACTTGA AGCGGCGCTG
CTCGATCTGC TGGGGCAATT TATGGGTGTC CCCGTTGCCG AGCTGTTGGG GCCGGGGAAA
CAGCGTGATG ATGTCACCGT GCTCGGCTAT CTGTTCTATA TCGGCGATCG CACAAAGACG
GATCTACCTT ACTTATCAGG TGAGAAAGTA TCAGGTGAGA AAGGCAAGCA CGAGTGGTAT
CACCTGCGTC ACCAGCAGGC GATGGACAGC GAAGCGATTG TGCGTTTGGC CGAAGCCACC
ACTGACCGTT ACGGATTTAA AGATTTCAAA CTCAAAGGTG GCGTGTTGCC CGGCGAGCAG
GAAATCGATG CGGTGAAGGC GCTGAAGAAA CGCTTCCCGG ATGCCCGTAT TACCGTCGAT
CCAAACGGAG CCTGGCTGCT GGATGAAGCG ATTGATTTAT GCAAAGACAT GAAGGGCATT
CTGACCTATG CGGAAGATCC GTGCGGTGCC GAGCAAGGTT TCTCCGGTCG TGAGGTGATG
GCGGAATTCC GTCGCGCCAC CGGGCTGCCG GTCGCGACTA ACATGATTGC CACCAACTGG
CGTGAAATGA ACCATGCCGT GATGTTGCAG GCAGTCGATA TTCCGCTGGC CGATCCGCAT
TTCTGGACGA TGCACGGTGC AGTGCGCGTC GCCCAGATGT GTGATGAATG GGGCCTGACG
TGGGGCTGCC ATTCCAATAA CCACTTCGAT ATTTCTCTGG CGATGTTCAC GCACGTAGGG
GCTGCGGCAC CGGGTAACCC GACGGCGATT GATACGCACT GGATCTGGCA GGAAGGGCAA
CACCTGACCA AAGAGCCGCT GCAAATCGTC AACGGCAAGA TTAAGGTGCC GGATCGTCCC
GGTCTGGGGA TTGAATTGGA TATGGAACAG GTCATGAAAG CCCACGATCT GTACAAAAAA
TTACCGAGCG GAGCACGTAA TGATGCCGTT GCCATGCAGT ACCTGATTCC CGGTTGGAAA
TTTGACCGCA AACGTCCGGT TTTTGGCCGC TAA
|
|---|
| Protein sequence | MTNFSATPVI ADMKVIPVAG YDSMLLNIGG AHGAYFTRNL VILTDSAGHT GVGEAPGGEV
IYNTLVEAIP RVKGEQIARM NRLVHDIHVG NQSSDFDSFG KGAWTFELRV NAVAALEAAL
LDLLGQFMGV PVAELLGPGK QRDDVTVLGY LFYIGDRTKT DLPYLSGEKV SGEKGKHEWY
HLRHQQAMDS EAIVRLAEAT TDRYGFKDFK LKGGVLPGEQ EIDAVKALKK RFPDARITVD
PNGAWLLDEA IDLCKDMKGI LTYAEDPCGA EQGFSGREVM AEFRRATGLP VATNMIATNW
REMNHAVMLQ AVDIPLADPH FWTMHGAVRV AQMCDEWGLT WGCHSNNHFD ISLAMFTHVG
AAAPGNPTAI DTHWIWQEGQ HLTKEPLQIV NGKIKVPDRP GLGIELDMEQ VMKAHDLYKK
LPSGARNDAV AMQYLIPGWK FDRKRPVFGR
|
|---|
| |