| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3390 |
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| Symbol | rumA |
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| ID | 8134370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3825595 |
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| End bp | 3826944 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644866691 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_003018942 |
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| Protein GI | 253689752 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.02988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGT GTGACGACCC GGAAAGCGAT TCCTGCTAAG
AACCTCACTG TTACGGTCAC GTCACTTGAC CCGTTTGGGC AGGGAGTGGC GCGTCACGAA
GGTAAGACGG TGTTTGTCAC GGGTGTACTG CCGGGAGAGC AGGCTGAGGT CCAACTGACG
GAAGATAAAC GTCAGTTTTC GCATGCAAAG CTTAAACGCC TGCTGACGCA CAGCCCACAG
CGCGTTGAAC CGCAGTGCCC TCACTTTACC CGCTGCGGCG GCTGCCAGCA GCAGCACGCG
GACATCACGC TGCAACAGAG CAGCAAAACG GCCGCATTAA TGCGTCTGAT GACGCGGGAA
ACAGGCGCTG AGTTGCCTGA CGCGTCTCTG ATTGCTGGCA CACCTTATGC CTATCGGAGG
CGCGCGCGGC TTGCGTTATA CTTTCAGGCA AAAGAGCAGC GTCTGTTGAT GGGCTATCGG
CAGTCAAATT CTCACGATTT GGTGGATATC AAAGCTTGTC CGGTGCTGCG CCCTGAGCTT
GAAGCGCTGC TGCAACCGCT GCGCGACTGC CTGAGCCGAT TAAAGGCGGT GAAGCGCCTT
GGGCATGTGG AACTGGTGCA GGCGGAAAAC GGTCCGCTGC TGGTGCTGAG GCACCTTGAT
CCGCTGCATC CAGCGGATGA GCAGGCGCTG CGAGATTTTG CCGAGCAGCA GGGCGTCTCG
GTTTATCTGG CGCCGGATGC CGATTCGCTG ACGTGTCTGC ACGGCGACGA GCCGGTTTAT
CTCGTTGCCG GACTGACGCT GGCCTTTAGC CCGCGTGATT TTATTCAGGT CAATGATGCG
GTCAACCAGC AGATGGTTGC ACAGGCGCTG GCGTGGCTGG ATGTGCAACC GCAGGATAGA
ATATTAGATC TGTTTTGCGG TATGGGTAAC TTCACGCTAC CGCTGGCACA GCGCGCCGCC
AGCGTCGTTG GCGTTGAAGG GGTAACCGCG CTGGTAGAGA AAGGGCGCGA AAATGCCCGA
CGCAATGCGT TGTCCAATGT CACATTTTTT CACCAAAATC TCGAAGATGA CGTCACACAG
CAGCCGTGGG TGGCTCAGGG TTTTGATAAG ATATTACTTG ATCCGGCACG TGCGGGCGCG
GCAGGCGTGA TGGAGCAGAT AACCCGACTG GCACCTAAAC GGGTGGTGTA TGTTTCCTGT
AATGCCACGA CGCTAGCGCG CGACAGCAAA GTATTACTGG CGGCAGGTTT TACGCTGGTG
AATGTCGCGA TGCTGGATAT GTTTCCACAT ACCGGGCACC TTGAATCGAT GGCACTGTTT
TTGCACGATA CCGGCACGCG AAAGGCGTAA
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| Protein sequence | MAQFYSPNRR VTTRKAIPAK NLTVTVTSLD PFGQGVARHE GKTVFVTGVL PGEQAEVQLT
EDKRQFSHAK LKRLLTHSPQ RVEPQCPHFT RCGGCQQQHA DITLQQSSKT AALMRLMTRE
TGAELPDASL IAGTPYAYRR RARLALYFQA KEQRLLMGYR QSNSHDLVDI KACPVLRPEL
EALLQPLRDC LSRLKAVKRL GHVELVQAEN GPLLVLRHLD PLHPADEQAL RDFAEQQGVS
VYLAPDADSL TCLHGDEPVY LVAGLTLAFS PRDFIQVNDA VNQQMVAQAL AWLDVQPQDR
ILDLFCGMGN FTLPLAQRAA SVVGVEGVTA LVEKGRENAR RNALSNVTFF HQNLEDDVTQ
QPWVAQGFDK ILLDPARAGA AGVMEQITRL APKRVVYVSC NATTLARDSK VLLAAGFTLV
NVAMLDMFPH TGHLESMALF LHDTGTRKA
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