Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3383 |
Symbol | |
ID | 8134363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3814359 |
End bp | 3815036 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866684 |
Product | ThiJ/PfpI domain protein |
Protein accession | YP_003018935 |
Protein GI | 253689745 |
COG category | [R] General function prediction only |
COG ID | [COG0693] Putative intracellular protease/amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATTT TAATGGTACT GACTTCTCAC GACAAACTGG GCAACACCGG CAATAAAACC GGCTTCTGGC TGGAAGAGTT TGCCGCCCCT TATTACACCT TTAAAGATGC AGGCGCCGAG CTGGTGCTCG CTTCCCCTGC TGGCGGCCAG CCGCCCCTCG ACCCGAAAAG CGATCTGGCC GATTTTCAAA CTGAGCTGAC GCATCGCTTT AAAGCCGACC CTGCTGCGCA GCAGGAACTG GCCAATACGG TAAAACTCGA TACCGTCAGC GAACAGGACT TCGATGCCGT CTTCTATCCC GGTGGTCACG GCCCGCTGTG GGATCTGGCA GAATCGCCGG TCTCTATCGC GCTCATCGAA GCCTTTGTAC GCGCCAACAA GCCGACTGGT TTTGTCTGCC ACGCACCGGG CGTCCTGATT CATGTGAAAG CAGAAAATGG CGACGCCCTG ATTAAAGGCC GCAAAGTGAC GGGCTTCACC AACGGTGAAG AAGAAGCGGT TCAGTTGACG GACGTAGTGC CTTTCCTGAT TGAAGATGAA TTCAAGAAAC TGGGTGGACT ATACGAAAAA GGCCCCGACT GGGCACCGTA CCTCGTTGAA GACGGCAAGC TGATCACTGG TCAGAACCCG GCAAGCTCGG AAGTCGTCGC CAAAGCGATC CTCAAACAGC TGGCTTAA
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Protein sequence | MKILMVLTSH DKLGNTGNKT GFWLEEFAAP YYTFKDAGAE LVLASPAGGQ PPLDPKSDLA DFQTELTHRF KADPAAQQEL ANTVKLDTVS EQDFDAVFYP GGHGPLWDLA ESPVSIALIE AFVRANKPTG FVCHAPGVLI HVKAENGDAL IKGRKVTGFT NGEEEAVQLT DVVPFLIEDE FKKLGGLYEK GPDWAPYLVE DGKLITGQNP ASSEVVAKAI LKQLA
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