Gene PC1_3352 details

Gene Information

• Locus tag: PC1_3352
• Symbol: ispF
• ID: 8134332
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 3780907
• End bp: 3781404
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644866653
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_003018904
• Protein GI: 253689714
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATCG GTCACGGTTT TGATGTCCAT AAGTTCGGTG GAGAAGGTCC GTTGGTGATC 
GGTGGCGTGC GAATTCCTTA TACTCAGGGC CTGCTGGCGC ATTCCGATGG GGATGTCGTG 
CTGCATGCGG TGACGGATGC CCTGTTGGGC GCCGCCGCGC TGGGTGATAT TGGCAAGCTG 
TTCCCTGATA CCGATCCGGC TTTTAAAGGG GCGGACAGCC GTGGTCTGTT GCGTGAAGCC 
TGGCGCCGTA TCAATGAAAA AGGCTATCAG TTGGGCAATC TGGACGTCAC GATTATTGCG 
CAGGCACCGA AAATGGCACC GCATATTCCG CAAATGCGCG TGAATCTGGC TGAGGATCTG 
CTGTGCCATA TGGATGATGT CAATGTGAAA GCCACCACGA CAGAACAGCT GGGCTTTACC 
GGTCGTGGTG AAGGCATTGC CTGTGAAGCC GTTGCCTTGC TGGTGAAAAA AGGAACTGGC 
GAAATTGTCG CGTGGTAA 

 

Protein sequence

MRIGHGFDVH KFGGEGPLVI GGVRIPYTQG LLAHSDGDVV LHAVTDALLG AAALGDIGKL 
FPDTDPAFKG ADSRGLLREA WRRINEKGYQ LGNLDVTIIA QAPKMAPHIP QMRVNLAEDL 
LCHMDDVNVK ATTTEQLGFT GRGEGIACEA VALLVKKGTG EIVAW