| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3254 |
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| Symbol | |
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| ID | 8134226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3670229 |
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| End bp | 3671707 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644866551 |
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| Product | type VI secretion protein, EvpB/VC_A0108 family |
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| Protein accession | YP_003018810 |
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| Protein GI | 253689620 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAATAG TTGAAGAACA GGCCCAGGCA GGGGCTGCCA GCGCCTCCGG ATCGCTGCTT
GATGACATCA TGGCTCAAGC GCGTATCACC CCGGTCGATG AAGGCTACAG CGTTGCTAAA
CAGGGGATTG CCGCACTGGT CGCTAACATT CTTGATAGCG GTAATGCAGC AGAACCCGTG
AATAAAGCGC TGGTCGATAG CATGATTGTC GAACTGGACA AAAAGCTCAG TAAGCAGATC
GACGTTATTC TGCATGCTAA AGAACTTCAG GAGCTGGAAT CTTCCTGGCG TTCGCTGAAA
CTGCTTGTCG ATCGCACTGA TTTCCGTGAA AACATCAAAC TGTTGGTGTT ACATGCGACG
AAAGAAGAGC TGTTAGAGGA TTTTGAGTTC GCGCCTGAAA TCTCACAGTC TGGCTTCTAT
AAACATGTGT ACTCCAGCGG TTACGGCCAG TTCGGCGGCC AGCCTATTGG TGGCGTGATC
GGTGACTATG CGATGACGCA AAGCTCACCA GACATCAAAC TGATGCAGTA CGTCAGCGCC
GTTGGCGCGA TGGCGCACGC ACCATTCATC TCTTCCGTTG CGCCGACCTT CTTTGGCGTG
GATAGCTTCA CCGATTTACC GTCCATCAAA GATCTGAAAT CCGTTTTCGA AGGCCCTGCC
TACACGAAAT GGCGTTCGCT GCGTGAGTCT GAAGACGGTC GCTATCTGGG GCTGACGGCA
CCGCGCTTCC TGGCTCGCTT GCCTTACGAC CCGGTAGAAA ACCCGATTAA GGGCTTTAAC
TACAAAGAAG ATATCAGCAC CGATCACGAA CACTATCTGT GGGGCAATAC CGCCTACCTG
ATGGGAACGG CGCTGACGGA CAGCTTCGCG AAATACCGCT GGTGTCCGAA CATCATTGGC
CCGCAGAGCG GCGGTGCGAT TACCGACCTG CCAGTGCATG TTTATGAAGC TATGGGTCAA
CTTCAGGCCA AGATCCCGAC TGAAGTCCTG ATCACCGATC GTCGCGAATA TGAAATGGCC
GAAGAGGGCT TTATCACGCT GACGATGCGT AAAGACAGCG ACAACGCGGC TTTCTTCTCG
GCTAACTCGG TGCAGAAGCC GAAGGTGTTC CCGAACACCA AAGAAGGCAA AGAAGCGGAA
ACCAACTACA AGCTGGGTAC GCAGCTGCCG TACATGTTCA TCATCAACCG TCTGGCGCAC
TACATCAAAG TGCTACAGCG TGAACAGATT GGCTCATGGA AAGAGCGTCA GGATCTGGAA
CGTGAGCTGA ATACCTGGAT TAAACAGTAC ATCGCCGATC AGGAAAACCC GCCGGCAGAT
GTCCGTAGCC GTCGTCCTCT GCGTGCTGCA CAAATCAAAG TGCTGGATGT GGAAGGAGAA
CCAGGTTGGT ATCAGGTCAC CATGTCTGTG CGCCCGCACT TCAAGTACAT GGGGGCAAAC
TTTGAGCTGT CGCTGGTAGG GCGTTTGGAT AAGGAATAA
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| Protein sequence | MSIVEEQAQA GAASASGSLL DDIMAQARIT PVDEGYSVAK QGIAALVANI LDSGNAAEPV
NKALVDSMIV ELDKKLSKQI DVILHAKELQ ELESSWRSLK LLVDRTDFRE NIKLLVLHAT
KEELLEDFEF APEISQSGFY KHVYSSGYGQ FGGQPIGGVI GDYAMTQSSP DIKLMQYVSA
VGAMAHAPFI SSVAPTFFGV DSFTDLPSIK DLKSVFEGPA YTKWRSLRES EDGRYLGLTA
PRFLARLPYD PVENPIKGFN YKEDISTDHE HYLWGNTAYL MGTALTDSFA KYRWCPNIIG
PQSGGAITDL PVHVYEAMGQ LQAKIPTEVL ITDRREYEMA EEGFITLTMR KDSDNAAFFS
ANSVQKPKVF PNTKEGKEAE TNYKLGTQLP YMFIINRLAH YIKVLQREQI GSWKERQDLE
RELNTWIKQY IADQENPPAD VRSRRPLRAA QIKVLDVEGE PGWYQVTMSV RPHFKYMGAN
FELSLVGRLD KE
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