Gene PC1_3253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3253 
Symbol 
ID8134225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp3669792 
End bp3670223 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content53% 
IMG OID644866550 
Producttype VI secretion system lysozyme-related protein 
Protein accessionYP_003018809 
Protein GI253689619 
COG category[S] Function unknown 
COG ID[COG3518] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03357] type VI secretion system lysozyme-related protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGTCTC TTTCTGCCTG GGAAAGGGGA AACGCGGCAA GTCTGTTTGA TCGTATCCGT 
GGGGAGGAGC GCCGCTCCTC CCCAGAAACG GAAGTTGAAG CACTGATCGA GTCCGTTAAG 
CGTCAACTGG ACAATGTGCT CAATACCCGG CCCGGAAATT GTCGCAGCGC ACCTGAGCTT 
GGCGTGATTG ATTTTAATGA CGCGACGCAG GGTGGGGCGG ACATTCGAGG GAAAATCCGG 
GAGGCGATCC GGCAGTGTAT CTGTCGCTTT GAACCTCGAA TTGTTCATGT GGATGTCGAC 
GCATCGGACT ATTTATCGAA TCCGATGGAG ATGTCGTTTC AGGTTACCGC GCATGTCAGA 
TTGGAAGATC TGGAGCAGGT CACCTCTTTC AATATCCACA TGGATAGCCA CCGCCATTAC 
AGAATGATCT GA
 
Protein sequence
MPSLSAWERG NAASLFDRIR GEERRSSPET EVEALIESVK RQLDNVLNTR PGNCRSAPEL 
GVIDFNDATQ GGADIRGKIR EAIRQCICRF EPRIVHVDVD ASDYLSNPME MSFQVTAHVR 
LEDLEQVTSF NIHMDSHRHY RMI