| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3252 |
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| Symbol | |
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| ID | 8134224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3668023 |
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| End bp | 3669789 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644866549 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_003018808 |
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| Protein GI | 253689618 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACTGG AACATTTTTT CAGGGATGAG CTGACCTACT TGCGCCTGCA AGGGCGTGAA
TTCGCCAAGG CGCACCCTGA GCTTACCCGA TTTTTGTCAG AACAGACCAC GGATCCAGAC
GTCGAGCGTC TGCTGGAAGG GTTCGCCTTT TTGACAGGGA GCCTGCGGGC GAAGATCGAG
GACGAATTTC CGGAGCTGAC ACACGGTCTG CTGGGCATGC TGTGGCCTAA TTACCTGCGC
CCGGTACCGA GCATGACGAT TATGCAGTTT TCGGTACTCC CCGGCGCAAT TGCCCAACCG
GCGTTTGTTG CGCGCGGCTG TGAGCTTGAT AGCCTGCCGA TTGATGATGT GATCTGTCAT
TTTCAGACCT GTCACGATGC CTGGATTTAT CCGGCGGATA TCCGCGAGAT CAAGGTACAG
AGCGGCAACG ATCTTTCCAC CATCACGCTG GATATTGGGT TGCATGGCCC GCTATCGCTC
AGCGATTTGC AACTCGACAA GCTGCGCTTT TATCTGGGTG GTGATACCTA TACGGCCTAC
GAACTCTATT TCTGGATTGC CAGCCAGCTG TCACATATTG AGCTGGAAAT TGATGGTCAA
CGCTTCCGTC AGGAAGCCAG CGTACTGAAG ACGGTCGGAT TTGAACGCGA AGATGCGCTA
TTGCCGTACC CCGGCAACGT TTACTCGGGC TATCGCATTT TGCAGGAATA CTTCTGTTTT
CCTGAAAGCT TCCTCTTTTT CCAACTCGCG GGCGCGGTAT GGCCGGATCT CCCGCTGACG
GTAACGGAAT TCCGTCTGCA CTTTTGCTTC GATCGCCCGC TGCCAGCGGA ACTGAAGATT
CGTCCTGATT CATTCATGCT CAACTGTGTG CCGGCGATCA ATCTCTTCCA GCATGATAGC
GAGCCGATCA ACCTCAGCGG TCGCCAGACG GATTATCCGC TGAAGGCCAG CTATCGTAAC
GCTGATAGCT TTGAAATCTT CTCTGTGGAT AAGGTGGAAG GCTGGGTTGA AGGGAATTCC
GGGCGTGCTC GCGGCATTCC ACGAACCTAT CAGCCTTTTG AGAGCTTTCA GCACCAAATC
GAGCGCGCTA AAGGACGGCT GGCGCTTTAT TACCGCATTC GGGTAAGAGA GGCGGTGAAC
GGCAACGGCT TTGATCACAT GCTCTCTTTT GTCCGTGGCG ATGAGCAGGA AGTGATTGAT
TTGGATGAAT CCATTTCGGT TACCCTGACC TGCACCAATC GCTCGCGTGC GGCACAGTTA
CCTGTCGGGG CGATCTGCGT GCCGACCGGG AACTCGCCGT CTTTCGCGAC ATTTCGCAAT
CTGGTGCGGC CGACGCGACC GCTGCGGCCT GCGATGGACG GTAGCCTGCA CTGGACGCTG
ATCTCCAACC TGTCTCTGAA CTATGTGTCG CTGCTGCGGC GCGATGCACT GGTACAGATT
CTGCGTACCT ATGATTTCCC GGCGCTGCAC GACAAGCAGG CCGAACAGGC TTCGCGTAAG
CGTCTGGCGG GTATCGAATC TATCGAAACC ACCCCTATCG ATCGTCTGGT TCAGGGGATG
CCGGTTCGCG GCTTGAAATC CATTCTGTCA GTACGGCAAT CCGCGTTTTC CAGTGAAGGA
GAACTCTATC TGTTCAGTAC GGTGCTGGCG CACTTCTTCT CGCTATACGC CAGCGTCAAC
GCTTTCCACC TGTTGGAAGT GGTCAACATC GATAACAAGG AGCGCTACCG ATGGCCGGTA
CAGATAGGTC AACACTCAAT GATGTGA
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| Protein sequence | MSLEHFFRDE LTYLRLQGRE FAKAHPELTR FLSEQTTDPD VERLLEGFAF LTGSLRAKIE
DEFPELTHGL LGMLWPNYLR PVPSMTIMQF SVLPGAIAQP AFVARGCELD SLPIDDVICH
FQTCHDAWIY PADIREIKVQ SGNDLSTITL DIGLHGPLSL SDLQLDKLRF YLGGDTYTAY
ELYFWIASQL SHIELEIDGQ RFRQEASVLK TVGFEREDAL LPYPGNVYSG YRILQEYFCF
PESFLFFQLA GAVWPDLPLT VTEFRLHFCF DRPLPAELKI RPDSFMLNCV PAINLFQHDS
EPINLSGRQT DYPLKASYRN ADSFEIFSVD KVEGWVEGNS GRARGIPRTY QPFESFQHQI
ERAKGRLALY YRIRVREAVN GNGFDHMLSF VRGDEQEVID LDESISVTLT CTNRSRAAQL
PVGAICVPTG NSPSFATFRN LVRPTRPLRP AMDGSLHWTL ISNLSLNYVS LLRRDALVQI
LRTYDFPALH DKQAEQASRK RLAGIESIET TPIDRLVQGM PVRGLKSILS VRQSAFSSEG
ELYLFSTVLA HFFSLYASVN AFHLLEVVNI DNKERYRWPV QIGQHSMM
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