| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3248 |
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| Symbol | |
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| ID | 8134220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3663977 |
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| End bp | 3665314 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644866545 |
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| Product | type VI secretion protein, VC_A0114 family |
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| Protein accession | YP_003018804 |
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| Protein GI | 253689614 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAGTC GCAATCGCAT TATCTGGCGG GAAGGCCTGT TCATTAAACC GCAGCATTTT
CAACAGCAGC AAAGACACAC CGATTACGCA CTGCATGCGC GTCTCAGCGC TCTCAGTGAT
TATTTCTATG GCTTGCAGTC GCTGGCGATT AACGAGGAAT ACCTCAATTT TGGCCGTATC
GCGCTGGTGA ACGCCAGCGG GGTGATGCCG GACGGCACCG TGTTCAATAT TCCGGGTGAT
GACGCTCTGC CACTGCCGCT GGAAATTACC GATGTGGCGC TGGCAAACCA GAAAGTGTAT
CTGGCGTTGC CGCTGGCGGT GAATGGCGTC AGTGAAGTCG GTCAGCCGGG GCAGGGGATC
GCCAGCCGCT TGCAATCGCA TCGACATGAC GTGCGCGATC TGCACAGCGA CGGCGGCGAT
ATCGTTTCTC TGGAGGTCGG TAAGGTCAGC CTGCGTCTGA TGCTCGATCG TGACGATCGC
AGCGCTTATG CCTCGCTGGC GATTGCCAAC ATTCTGGATA AACGTCCTGA CGGCGGCTTA
ATTCTGGATC CTAACTTCAT GCCGTGCAGC ATCAGCGTCA CGGCTATTCC CACCTTAAAA
CGCTTTTTGG GGGAGTCCGC CGGTCTGGTG GCGGAGCGTG CGCGCAGTCT GGCGCAGCGT
ATTGCTGCAC CGGGACAGCA GGGCGTCGCG GATGTCGCTG AATTTATGAT GCTGCAATTA
CTTAACCGCG CGCAGCCCAA ACTGTCGCAT CTGGCGCGTC TGGGCACTTT GCACCCTGAA
CGCCTGCACG AAACGCTGGT TGAACTGTGC GGCGAACTGA TGACGTTCAC CGATGAATCG
CGCCTGCCGC CGGAATTCCC TGCCTACCGC CACGAGCACC AGCAGGCCAG CTTTGAGCCG
CTGATGATGG CGCTGCGTCA GGCGCTGAGC ACCGTGCTGT CGCCGCGCGC CGTTTCCATC
CAACTGAAGA AACAGCCGTA TGGCGTGATG GTAGCAATGG TCGGTGATGC GGAATTGATG
ACCAGCGCCG AGTTTGTGCT GGCGGTACGC GCGCGCATGC CGCAGGAGCA CCTGCGTAAA
CAGCTGTTGC AACAAACGAA GATCGCCTCC AGCGAGAAGA TCCGTGAACT GATCAGCCTG
CAACTGCCGG GAATCCCGCT ACTGCCGCTG CCGGTGGCAC CGCGCCAACT GCCTTATCAC
GCAGGTTACA GCTATTTCCA ACTGGATAGA CAAAGCCCCG CCTGGCAGAT GCTGGTGTCC
GGCAATACGT TGGCGTTCCA CATTGCTGGT GAATTCCCTG AGCTGGATAT GCAGCTTTGG
GCGATCCGCG GCCAGTAG
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| Protein sequence | MSSRNRIIWR EGLFIKPQHF QQQQRHTDYA LHARLSALSD YFYGLQSLAI NEEYLNFGRI
ALVNASGVMP DGTVFNIPGD DALPLPLEIT DVALANQKVY LALPLAVNGV SEVGQPGQGI
ASRLQSHRHD VRDLHSDGGD IVSLEVGKVS LRLMLDRDDR SAYASLAIAN ILDKRPDGGL
ILDPNFMPCS ISVTAIPTLK RFLGESAGLV AERARSLAQR IAAPGQQGVA DVAEFMMLQL
LNRAQPKLSH LARLGTLHPE RLHETLVELC GELMTFTDES RLPPEFPAYR HEHQQASFEP
LMMALRQALS TVLSPRAVSI QLKKQPYGVM VAMVGDAELM TSAEFVLAVR ARMPQEHLRK
QLLQQTKIAS SEKIRELISL QLPGIPLLPL PVAPRQLPYH AGYSYFQLDR QSPAWQMLVS
GNTLAFHIAG EFPELDMQLW AIRGQ
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