Gene PC1_3247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3247 
Symbol 
ID8134219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3663185 
End bp3663961 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content55% 
IMG OID644866544 
Producttype IV / VI secretion system protein, DotU family 
Protein accessionYP_003018803 
Protein GI253689613 
COG category[S] Function unknown 
COG ID[COG3455] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03349] type IV / VI secretion system protein, DotU family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATCG AGGTGATTAA AAACGATCAA CTGGGAGATC TGCTGTTTGA TCATGCCCGA 
CAGCTGGATA TGGACTCCGA CTACTGGTTT CGCCTGCGCG GGCAAAGCAT CAATCCGATG
ATTGATGCGG TCACGCCGCT ATTGGGCATG GTGGAGCGGG TACGCCAGCT CTCCGCCTAC
GAGGGCGTAG AGGATCTCTA TCAGCGCGTG GTGTCTGAAA TTCAGGCTAT TGAGCAGGAG
TTACATTCTC ATGGCTACGA AAACGGCGTG ATTCTGTCGT TCCGCTACAT CCTCTGCACC
TTCATTGATG AAGCCGTAAT GGGGCGGGAA TGGGGCGGGC AGAGCATGTG GTCGGCCCAT
TCTCTGCTGA CCCGTTTTCA CAATGAGACC TGGGGCGGCG AAAAGGTATT TGTCCTGCTG
GAGAAGCTAC TGGATGACCC GGCACGCTAT CGCGACATTC TGGAGTTTAT TTACCTCTGC
CTCTGCCTAG GTTTTGAAGG GCGCTATCGG GTGATGACTC AGGGGCGTGA GGAACTCAAT
CGCGTCGTGA GCAAGTTGCA TGACACGCTG CGCCCTGAGC CCGCGGATTC TCCGACCGTC
TTCCACCTGA ATCTGGGGCA ACAGGCCTCG CGCTACCACC TGCGCAGACA GGTGTCATTG
CGCACGCTGT TCATTGGCGT GTGTGTGGTT CTGGTGGCCG CATTCGGCCT GTACCGTTAC
CAGCTAACTC ATCAAACCCA GGACGTACTG CGTCAGCTGG GAGAATTATT ACAATAA
 
Protein sequence
MSIEVIKNDQ LGDLLFDHAR QLDMDSDYWF RLRGQSINPM IDAVTPLLGM VERVRQLSAY 
EGVEDLYQRV VSEIQAIEQE LHSHGYENGV ILSFRYILCT FIDEAVMGRE WGGQSMWSAH
SLLTRFHNET WGGEKVFVLL EKLLDDPARY RDILEFIYLC LCLGFEGRYR VMTQGREELN
RVVSKLHDTL RPEPADSPTV FHLNLGQQAS RYHLRRQVSL RTLFIGVCVV LVAAFGLYRY
QLTHQTQDVL RQLGELLQ