Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3247 |
Symbol | |
ID | 8134219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3663185 |
End bp | 3663961 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866544 |
Product | type IV / VI secretion system protein, DotU family |
Protein accession | YP_003018803 |
Protein GI | 253689613 |
COG category | [S] Function unknown |
COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCATCG AGGTGATTAA AAACGATCAA CTGGGAGATC TGCTGTTTGA TCATGCCCGA CAGCTGGATA TGGACTCCGA CTACTGGTTT CGCCTGCGCG GGCAAAGCAT CAATCCGATG ATTGATGCGG TCACGCCGCT ATTGGGCATG GTGGAGCGGG TACGCCAGCT CTCCGCCTAC GAGGGCGTAG AGGATCTCTA TCAGCGCGTG GTGTCTGAAA TTCAGGCTAT TGAGCAGGAG TTACATTCTC ATGGCTACGA AAACGGCGTG ATTCTGTCGT TCCGCTACAT CCTCTGCACC TTCATTGATG AAGCCGTAAT GGGGCGGGAA TGGGGCGGGC AGAGCATGTG GTCGGCCCAT TCTCTGCTGA CCCGTTTTCA CAATGAGACC TGGGGCGGCG AAAAGGTATT TGTCCTGCTG GAGAAGCTAC TGGATGACCC GGCACGCTAT CGCGACATTC TGGAGTTTAT TTACCTCTGC CTCTGCCTAG GTTTTGAAGG GCGCTATCGG GTGATGACTC AGGGGCGTGA GGAACTCAAT CGCGTCGTGA GCAAGTTGCA TGACACGCTG CGCCCTGAGC CCGCGGATTC TCCGACCGTC TTCCACCTGA ATCTGGGGCA ACAGGCCTCG CGCTACCACC TGCGCAGACA GGTGTCATTG CGCACGCTGT TCATTGGCGT GTGTGTGGTT CTGGTGGCCG CATTCGGCCT GTACCGTTAC CAGCTAACTC ATCAAACCCA GGACGTACTG CGTCAGCTGG GAGAATTATT ACAATAA
|
Protein sequence | MSIEVIKNDQ LGDLLFDHAR QLDMDSDYWF RLRGQSINPM IDAVTPLLGM VERVRQLSAY EGVEDLYQRV VSEIQAIEQE LHSHGYENGV ILSFRYILCT FIDEAVMGRE WGGQSMWSAH SLLTRFHNET WGGEKVFVLL EKLLDDPARY RDILEFIYLC LCLGFEGRYR VMTQGREELN RVVSKLHDTL RPEPADSPTV FHLNLGQQAS RYHLRRQVSL RTLFIGVCVV LVAAFGLYRY QLTHQTQDVL RQLGELLQ
|
| |