Gene PC1_3245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3245 
Symbol 
ID8134217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3659033 
End bp3660571 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content59% 
IMG OID644866542 
ProductSigma 54 interacting domain protein 
Protein accessionYP_003018801 
Protein GI253689611 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACATG CCCTCGAACT GGCGCTTGCA CTCACCCGGC AGCATGACGA GGCCGGTCTG 
TGCGACTGGC TGCTGGAGAC CATGCAGGCT GCCTGGCAGC CTCAAGGGAT GCTACTGGGG
ATGGTGGATG TCAGCGGCAG GCAGCTGACC TGCCAGGGGC GGGTGCATGA CACGCCGGTG
GCGCTGAACC TGGGGGTGGA TGACTTTAGC CACCCGCTGG CTTACGCGCT GCATAAGAAT
CAGGCGCGTA CCTGGGATTC TCTCTATGGC GGCGCACGCA TTGAGCACCG TGATTTTCGG
CAGATGCTGA TCTCTGTCGG AACGAATTGC GGGCTTCATG CGCAGCCATT GCTGTCAGAC
AGCGGTAAGC CGCTGGCGGT GCTGGCGCTG CTGGATACGC CGACGCGCCT GCAAACGTTG
CATCAGCGCG GTGAGTGTGA ACGGCTGGCA CAGGTGTTTT GTCGCCAGCT TATCCTGCTG
CGTGAACTGG CACACACCCG TCGGGAGCAG GTCGCGCTGA GAGATTCGCT CCGCCAGATT
AAGGATGAAG GGCAAAGCCG TCGTGAGCAG GAAAAACGGG TGGAAACGAC GCTGGTGGGT
CAGTCCACCG TGATTAAGGC GCTGCACCAG CAGATTTATC AGGCGGCAAA ACACCGTCTT
TCGGTGCTGA TTCAGGGCGA AACCGGCTCA GGGAAAGATG TGGTGGCGCG TTTGCTGCAT
CAGTGCTCCG AGCGTGCCAG CAAACCTTTT ATTGCCATCA ACTGTGCCGC GATCCCGGAA
AACCTGATTG AAAGCGAGCT GTTTGGCTAC CAGAAAGGCG CGTTCTCCGG CGCACAAAGC
AACAAGATTG GTCTGATCGA GCAGGCTAAC GGCGGAACCC TGTTTCTGGA TGAGGTCGGC
GATATGCCAC AGTCCATGCA GGCCAAGCTG TTAAGGGTAT TGGAGACGCA CAGCTTCCGT
CCTTTGGGCG CGGAGAAAGA AGTGCATTCC GATTTCCGCC TGATTGCCGC GACGCATCAG
CCGCTGGAGC AGCACGTGTC TGATGGCGTG TTTCGGCAGG ATCTCTATCA CCGCCTTTGC
CAGTGTTTAT TGCAGGTCGC GCCGCTGCGC GAGCGGCCGG ACGATATTCG CCTGCTGTGC
GAGCACTTCA TCAATCAATT CGCAGACAAA CAGCAAAAAC ATGTTGGGCC ATTAAATCGG
GCTTTCCTGC GCCAACTGGT AGGGTATGAC TTTCCCGGCA ATGTGCGGGA ACTGCGTAAC
CTGCTGGAGG TTGCCTGCGC CCATACGCCG GACGGCGAGG CGCTGTCTCT GGCGTCGTTG
CCGCCCGAGT TGCGCGAGCG GCTAACGAGT AGCACGGCTG AAGAGCAGGA TCGCTACCAA
CACATCCACG ATTTGCGTAT TGCCACACAG CGGTATGAAG CGGCTGTCAT TGAGGCACGC
CTGCGCCAGT TTCAGGGGAA CCGCCTGCTG GTGGCTGATA GCCTCAATAT TCCCAAACGT
ACTCTTGACC ACAAATGCCA GAAGCTGGAG GTAAATTGA
 
Protein sequence
MQHALELALA LTRQHDEAGL CDWLLETMQA AWQPQGMLLG MVDVSGRQLT CQGRVHDTPV 
ALNLGVDDFS HPLAYALHKN QARTWDSLYG GARIEHRDFR QMLISVGTNC GLHAQPLLSD
SGKPLAVLAL LDTPTRLQTL HQRGECERLA QVFCRQLILL RELAHTRREQ VALRDSLRQI
KDEGQSRREQ EKRVETTLVG QSTVIKALHQ QIYQAAKHRL SVLIQGETGS GKDVVARLLH
QCSERASKPF IAINCAAIPE NLIESELFGY QKGAFSGAQS NKIGLIEQAN GGTLFLDEVG
DMPQSMQAKL LRVLETHSFR PLGAEKEVHS DFRLIAATHQ PLEQHVSDGV FRQDLYHRLC
QCLLQVAPLR ERPDDIRLLC EHFINQFADK QQKHVGPLNR AFLRQLVGYD FPGNVRELRN
LLEVACAHTP DGEALSLASL PPELRERLTS STAEEQDRYQ HIHDLRIATQ RYEAAVIEAR
LRQFQGNRLL VADSLNIPKR TLDHKCQKLE VN