Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3245 |
Symbol | |
ID | 8134217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3659033 |
End bp | 3660571 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644866542 |
Product | Sigma 54 interacting domain protein |
Protein accession | YP_003018801 |
Protein GI | 253689611 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACATG CCCTCGAACT GGCGCTTGCA CTCACCCGGC AGCATGACGA GGCCGGTCTG TGCGACTGGC TGCTGGAGAC CATGCAGGCT GCCTGGCAGC CTCAAGGGAT GCTACTGGGG ATGGTGGATG TCAGCGGCAG GCAGCTGACC TGCCAGGGGC GGGTGCATGA CACGCCGGTG GCGCTGAACC TGGGGGTGGA TGACTTTAGC CACCCGCTGG CTTACGCGCT GCATAAGAAT CAGGCGCGTA CCTGGGATTC TCTCTATGGC GGCGCACGCA TTGAGCACCG TGATTTTCGG CAGATGCTGA TCTCTGTCGG AACGAATTGC GGGCTTCATG CGCAGCCATT GCTGTCAGAC AGCGGTAAGC CGCTGGCGGT GCTGGCGCTG CTGGATACGC CGACGCGCCT GCAAACGTTG CATCAGCGCG GTGAGTGTGA ACGGCTGGCA CAGGTGTTTT GTCGCCAGCT TATCCTGCTG CGTGAACTGG CACACACCCG TCGGGAGCAG GTCGCGCTGA GAGATTCGCT CCGCCAGATT AAGGATGAAG GGCAAAGCCG TCGTGAGCAG GAAAAACGGG TGGAAACGAC GCTGGTGGGT CAGTCCACCG TGATTAAGGC GCTGCACCAG CAGATTTATC AGGCGGCAAA ACACCGTCTT TCGGTGCTGA TTCAGGGCGA AACCGGCTCA GGGAAAGATG TGGTGGCGCG TTTGCTGCAT CAGTGCTCCG AGCGTGCCAG CAAACCTTTT ATTGCCATCA ACTGTGCCGC GATCCCGGAA AACCTGATTG AAAGCGAGCT GTTTGGCTAC CAGAAAGGCG CGTTCTCCGG CGCACAAAGC AACAAGATTG GTCTGATCGA GCAGGCTAAC GGCGGAACCC TGTTTCTGGA TGAGGTCGGC GATATGCCAC AGTCCATGCA GGCCAAGCTG TTAAGGGTAT TGGAGACGCA CAGCTTCCGT CCTTTGGGCG CGGAGAAAGA AGTGCATTCC GATTTCCGCC TGATTGCCGC GACGCATCAG CCGCTGGAGC AGCACGTGTC TGATGGCGTG TTTCGGCAGG ATCTCTATCA CCGCCTTTGC CAGTGTTTAT TGCAGGTCGC GCCGCTGCGC GAGCGGCCGG ACGATATTCG CCTGCTGTGC GAGCACTTCA TCAATCAATT CGCAGACAAA CAGCAAAAAC ATGTTGGGCC ATTAAATCGG GCTTTCCTGC GCCAACTGGT AGGGTATGAC TTTCCCGGCA ATGTGCGGGA ACTGCGTAAC CTGCTGGAGG TTGCCTGCGC CCATACGCCG GACGGCGAGG CGCTGTCTCT GGCGTCGTTG CCGCCCGAGT TGCGCGAGCG GCTAACGAGT AGCACGGCTG AAGAGCAGGA TCGCTACCAA CACATCCACG ATTTGCGTAT TGCCACACAG CGGTATGAAG CGGCTGTCAT TGAGGCACGC CTGCGCCAGT TTCAGGGGAA CCGCCTGCTG GTGGCTGATA GCCTCAATAT TCCCAAACGT ACTCTTGACC ACAAATGCCA GAAGCTGGAG GTAAATTGA
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Protein sequence | MQHALELALA LTRQHDEAGL CDWLLETMQA AWQPQGMLLG MVDVSGRQLT CQGRVHDTPV ALNLGVDDFS HPLAYALHKN QARTWDSLYG GARIEHRDFR QMLISVGTNC GLHAQPLLSD SGKPLAVLAL LDTPTRLQTL HQRGECERLA QVFCRQLILL RELAHTRREQ VALRDSLRQI KDEGQSRREQ EKRVETTLVG QSTVIKALHQ QIYQAAKHRL SVLIQGETGS GKDVVARLLH QCSERASKPF IAINCAAIPE NLIESELFGY QKGAFSGAQS NKIGLIEQAN GGTLFLDEVG DMPQSMQAKL LRVLETHSFR PLGAEKEVHS DFRLIAATHQ PLEQHVSDGV FRQDLYHRLC QCLLQVAPLR ERPDDIRLLC EHFINQFADK QQKHVGPLNR AFLRQLVGYD FPGNVRELRN LLEVACAHTP DGEALSLASL PPELRERLTS STAEEQDRYQ HIHDLRIATQ RYEAAVIEAR LRQFQGNRLL VADSLNIPKR TLDHKCQKLE VN
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