| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3239 |
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| Symbol | |
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| ID | 8134211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3649589 |
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| End bp | 3650107 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644866536 |
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| Product | type VI secretion system effector, Hcp1 family |
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| Protein accession | YP_003018795 |
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| Protein GI | 253689605 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAACTC CATGCTATAT CAGCATCGAA GGTAAAACGC AGGGCAACAT CACCGCGGGT
GCTTTCACGT CTGATTCTGT CGGCAACATC TATGTGGAAG GCCACGAAGA CGAAATGCTG
GTACAGGAAT TCAAACACAT AGTCACCGTA CCAACCGACC CGCAGTCTGG TCAGCCATCC
GGCCAGCGCG TACACAAGCC GTTCAAATTC ACCGTTGCGC TGAACAAAGC GGTTCCGCTG
ATGTACAACG CCCTGGCGTC CGGTGAAATG CTGCCGACCG TCACCCTGAA ATGGTACCGC
ACGTCAGTTG AAGGTAAGCA GGAGCACTTC TTCTCTACCG TGCTGACCGA TTCCACCATC
GTTGACATCG ACTGCAAAAT GCCACATTGC CAGGATCCGT CAAAACTGGA CTACACCCAG
TTAATCGAAG TGTCGCTGGC CTATCGCAAA ATTGACTGGG AGCACACGGT TGCCGGTACT
TCTGGTTCCG ATGACTGGCG TGCGCCGGTC GAAGCGTAA
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| Protein sequence | MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVEGHEDEML VQEFKHIVTV PTDPQSGQPS
GQRVHKPFKF TVALNKAVPL MYNALASGEM LPTVTLKWYR TSVEGKQEHF FSTVLTDSTI
VDIDCKMPHC QDPSKLDYTQ LIEVSLAYRK IDWEHTVAGT SGSDDWRAPV EA
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