| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3218 |
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| Symbol | |
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| ID | 8134190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3625953 |
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| End bp | 3627551 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644866518 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003018777 |
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| Protein GI | 253689587 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAA AAAGACGACA CCCAGTCAAC TTGCGTTCAC TCATTCTCTC CCTCGCCATT
ATCAGCATGC TCATTACGCT GACCAATGCC TATATCGCTG TTTATAATGT ACAAAAGAAG
CTCATCACCG ATCAGATACT AAATTCAAAC CTTAACTACT CTTCCAAACT CGCGGCGACT
ACGGAAAGTT TTCTTTCTTC AGCACAGCAG GAGCTGGCTT ACAGCGCAAC CTCAATAGCG
GATAATTTTA GTGACGACGC AGCACTGCTG GAGAAAAGTG AACAGACATA CCACATGAGC
CAAAGTTTTA ATTCTATTTT CGTTGCGGAT ACCCAGAATC AGATACACGC AGTTTACCCA
ACATCGCTGA ATCTGAAAGG AAGCACACTA ACCTCAGAGG CCAGTAAACT GGCACTGGTG
GAACAAAAGC CGTTAATCAG CCAGCCTTAT ATTTCAGTGA CGGGCAATCT GATCGTGCTG
GTGTCCTCCC CTATCAAAGA CAAACAGGGA AATTACCTCG GTTACATCGG CGGAACGATT
TATTTAAAAA ATAAAAGCGT CTTGAATGAA TTCATGAACA CCCATTTTTA TAACGATTAC
TCCAGTGTTT ACGTGATCGA TAAAAGTGGG ATTGTTCTCT ACCATCAGGA TAAACAGTGG
GTCGGCAAGC CCGTCAGCAA CCAGAAAATC AAAGACGCCT TTCGAGACAA GAAGAGTGGC
ACCGCCGCAA TGCCCGATAT GCAAGGCACT CCCTCTCTTG CGGGTTTTGA TACGGTCAAT
TCATCCGGCT GGATCATCAT TACCTTGCAC CCTTCTCAAA CCGTTATCGA TTTGCTTAGC
AGCGTAATGC GTTCCGTTTT ATATGAAGGC GCGCCAGTGA TGGCATTAAC GCTCATTGCA
CTCACCCTGC TCGCCTTCTC TATCGCCAAC CCTCTGCGCC TGTTGGCCGT TTCTGCCAGT
AAAATGGAGG AGCCCGGCGT GATTGAAAAA ATCAAGAAAG TCCCTTCCTG GTATTTTGAG
GTTGAACAGC TCAAACGCGT CATTCTTTTC GGCACCCTGC TGCTGCACAA ACGCATTGGC
AAACTGAGTT TGCAGGCCCA CACCGATCCA CTCACAGGGT TACTCAATCG TCGTGGCATC
TATGAAAGCA TTGAACTCAT TCTGCCAAAG AGCAATCAGG TTGCTGCCAT CGTGATTGAT
ATCGACCACT TCAAACGCGT GAATGATACC TACGGACACA ACATCGGCGA CGACGTCATC
AGGTTGCTGG CTAAAAGCAT AAAACAGGGT TCACGTGAAT CCGATCTGAT TTGCCGCACT
GGCGGAGAGG AATTCCTCGC ACTCCTGCCC GATACCGATA TGAAGCAAGC CGTTGATATT
GCTGAACGGT TGCGTAAAAA AGTGGAGAAG ATGCCGTTAC CGATTCCAGA AAATATCACG
ATCTCATTAG GCGTCACCTG CTTTATTCCG GGAGCAGAGC AGATCGATAA CGTGTTGAAA
ATCGCAGATG ACGCCCTCTA TCAGGCCAAG CATGAAGGCA GAAACCGGGT CGTCACCAAA
GTCGTTCCCG ACAGTTCAAT CAACAGCCAC ACAGAATAG
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| Protein sequence | MKIKRRHPVN LRSLILSLAI ISMLITLTNA YIAVYNVQKK LITDQILNSN LNYSSKLAAT
TESFLSSAQQ ELAYSATSIA DNFSDDAALL EKSEQTYHMS QSFNSIFVAD TQNQIHAVYP
TSLNLKGSTL TSEASKLALV EQKPLISQPY ISVTGNLIVL VSSPIKDKQG NYLGYIGGTI
YLKNKSVLNE FMNTHFYNDY SSVYVIDKSG IVLYHQDKQW VGKPVSNQKI KDAFRDKKSG
TAAMPDMQGT PSLAGFDTVN SSGWIIITLH PSQTVIDLLS SVMRSVLYEG APVMALTLIA
LTLLAFSIAN PLRLLAVSAS KMEEPGVIEK IKKVPSWYFE VEQLKRVILF GTLLLHKRIG
KLSLQAHTDP LTGLLNRRGI YESIELILPK SNQVAAIVID IDHFKRVNDT YGHNIGDDVI
RLLAKSIKQG SRESDLICRT GGEEFLALLP DTDMKQAVDI AERLRKKVEK MPLPIPENIT
ISLGVTCFIP GAEQIDNVLK IADDALYQAK HEGRNRVVTK VVPDSSINSH TE
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