| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3121 |
|---|
| Symbol | |
|---|
| ID | 8134082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3535384 |
|---|
| End bp | 3536154 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644866410 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_003018680 |
|---|
| Protein GI | 253689490 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCATT TGTATTGGGT GGCGCTACAG AGTATCTGGG TGAAAGAAGT TACCCGATTT
GGGCGTATCT GGATTCAGAC GCTGGTGCCG CCAGTGATCA CCATGACGCT GTATTTTATT
ATTTTTGGCA ACCTGATTGG TTCACGCATT GGCGAAATGC ATGGTTTTAC CTACATGCAG
TTTATCGTGC CGGGTTTGAT CATGATGGCG GTGATCACCA ACGCGTATGC CAATGTGGCC
TCTTCCTTCT TCAGCGCCAA GTTTCAACGC AATATTGAGG AACTGCTGGT TGCACCGGTG
CCGACTCACG TGATTATCGC GGGCTATGTC GGCGGCGGTA TCGCTCGTGG TCTGTGCGTG
GGAGTTTTGG TCACGGCGGT ATCGTTGTTT TTCGTCCCGC TGCACGTTCA TGCCTGGTGG
GTCATTGTTC TGACGCTGTT ATTGACGGCA ATGCTGTTCT CGCTGGCGGG ATTATTGAAC
GCGGTATTTG CGAAAACCTT TGATGATATC AGCCTGATTC CGACGTTTGT GTTAACGCCG
CTGACCTATC TGGGGGGGGT GTTTTACTCA CTGACGCTGC TGCCGCCGTT CTGGCAGGCT
GTGTCTAAAC TGAACCCAGT GGTGTACATG ATTAGCGGCT TCCGTTACGG CTTCCTCGGA
ATTCAGGACG TGCCGCTGCT ATTCACGATG TCGGTACTGA TTGCCTTTAT CGTGGTGTTT
TATCTGCTGG TCTGGTGGCT GATTGAACGC GGACGCGGGC TGCGGACGTA G
|
|---|
| Protein sequence | MMHLYWVALQ SIWVKEVTRF GRIWIQTLVP PVITMTLYFI IFGNLIGSRI GEMHGFTYMQ
FIVPGLIMMA VITNAYANVA SSFFSAKFQR NIEELLVAPV PTHVIIAGYV GGGIARGLCV
GVLVTAVSLF FVPLHVHAWW VIVLTLLLTA MLFSLAGLLN AVFAKTFDDI SLIPTFVLTP
LTYLGGVFYS LTLLPPFWQA VSKLNPVVYM ISGFRYGFLG IQDVPLLFTM SVLIAFIVVF
YLLVWWLIER GRGLRT
|
|---|
| |