| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3063 |
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| Symbol | |
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| ID | 8134018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3470085 |
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| End bp | 3471446 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644866346 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_003018622 |
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| Protein GI | 253689432 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCTCG GTAAATATAT CAAACGAATC AAACGATATT TTGTCGGCGG AGATGAAGAA
GGCCTGCAAA CGATGCCGGA AGTAAGCCGG GCAATGGCCG AGGATTCACC ACGTTCTATT
CGCTTCACGC TATGGGCTAT CGGCGCTTTT TTCCTGTTTT TCATACTGTG GGCTGGGCTG
GCGGATATCG ATGAAGTCAC CCGGGGTGAC GGTAAAGCCA TCCCGTCTTC CCGATTGCAA
AAAATCCAAA ACCTGGAAGG CGGCATTGTC ACAGAGGTGT TCATTCATGA AGGTCAGGTC
GTTAATGCGG GCGATCCTTT GCTGCGCCTT GATGATACGC GCTTCGCTTC CAATGTCGGT
GAAACCGAAG CCGACCGGCT TGCGCTGCTA TCACGTATCG AGCGCCTGAA TGCCGAAATC
AACGATCGGG AACTCGTACT TTCGGAAGAA ATTACGACGC AAGCGCCTAA AATCGCGGCC
GGAGAAAAAG AACTTTATAA CAGCCGCCGC CAGCAGCTCC ACAATGAGGT GTCTGGTCTG
GAAGAGCAGT TGATCCAACG TCGCCAGGAA CTGAGGGATT TCTCCGCAAA GGAAATTCAG
TTCCGCAATA GCCTGGGCCT GCTGCAACAA GAAATTAAAA TGTCAGAACC GCTGATCGCA
GAAGGCGCCA TTTCTAAGGT AGAAGTTTTA CGCCTGCGCC GCGCAGAAGT CGAAACCCGT
GGTCAGCTTG ATTCCATCAA GCTCTCGATT CCCCGGGCAG AGTCTGCGAT TAAAGAGAGC
GAGAATAAAA TAGAGGAAAC GCGCAGCCGT TATAAAAGCG AGGCGTTATC TCAGCTCAGC
GAAGCACAAA CCAACCTGAA CAAAATTGAA GCCACGGGCA AAGCACTCGA AGACCGGGTA
AACCGTACGC TGGTTGTCTC CCCCGTCCGT GGTATCGTGC AGCAGGTTTT GGTGAATACT
ATCGGCGGAG TGATTCAACC GGGTAGCGAC CTGGTTGAAA TTGTTCCACT GGACGACAAA
TTGTTAGTCG AAGCCAGAAT TCGTCCACAG GATATTGCGT TCTTGCACCC AGGTCAGGAT
GCCGTAATAA AATTGACGGC CTACGACTAC ACCATCTATG GCGGTTTAAA AGGCCAGTTG
GAACAAATCA GCCCAGACAC CGTAACCGAT AAAGAAGGGA ACAGCTTTTA TATTATTCGT
TTACGGACTG ATAAGAATTA TTTAGGCTCA GCCGATAAAC CACTTCTTAT CATTCCAGGC
ATGGTGGCCT CAGTTGATAT AATCACGGGC AAGAAAACGA TCCTCAGCTA TTTGTTAAAG
CCGATTATTC GGGCAAAAGC AGAAGCGTTA CGGGAAAGAT AA
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| Protein sequence | MRLGKYIKRI KRYFVGGDEE GLQTMPEVSR AMAEDSPRSI RFTLWAIGAF FLFFILWAGL
ADIDEVTRGD GKAIPSSRLQ KIQNLEGGIV TEVFIHEGQV VNAGDPLLRL DDTRFASNVG
ETEADRLALL SRIERLNAEI NDRELVLSEE ITTQAPKIAA GEKELYNSRR QQLHNEVSGL
EEQLIQRRQE LRDFSAKEIQ FRNSLGLLQQ EIKMSEPLIA EGAISKVEVL RLRRAEVETR
GQLDSIKLSI PRAESAIKES ENKIEETRSR YKSEALSQLS EAQTNLNKIE ATGKALEDRV
NRTLVVSPVR GIVQQVLVNT IGGVIQPGSD LVEIVPLDDK LLVEARIRPQ DIAFLHPGQD
AVIKLTAYDY TIYGGLKGQL EQISPDTVTD KEGNSFYIIR LRTDKNYLGS ADKPLLIIPG
MVASVDIITG KKTILSYLLK PIIRAKAEAL RER
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