| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3061 |
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| Symbol | |
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| ID | 8134016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3466364 |
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| End bp | 3467716 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644866344 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003018620 |
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| Protein GI | 253689430 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCGTA GATACCATTT TGCTTTATTG CCTTTTATTA CCGTTTTTTC CACAGCGACG
TATGCAGAGA CGATCCAGGA AGCCATTAAA AGCACGCTCT ATACCCACCC CGAAGTGAGC
GCATCTATTA ATAGTCGTTT TTCTGCCGAG CATGATTTGC GCGCAGCAAA AGGGGGATAT
CTTCCCTCCA TCACGCTGAG TGCTGGCGTT GGCCGCGAAG AAACCGATAG CCCCTCAACA
CGCGCCAGCA TCAATAAACG CGTTGAACTC AGCCGTCAGG AATCGAGTAT CAATTTAAGC
CAGACGGTGT TCGATGGTTT CGCCACTTCA AGCGAGGTTG GCAGACAACG CGCCACAGTC
AACTCACGCG CCTATAAAGT ATTAAATACC AGTGAGTCGA CAGCATTAGA TACCGTTCAG
GTCTATCTCA ATGTTCTGCA ACGTCAGGAA TTTGTCCGCC TGGCGGAAGC CAATCTGGCA
AGCCACGAGC GCATTTACGA TCAAATCAGG CTACGCAGCG AACAGGGCGT TGGCCGTCTG
GCGGATTTGG ATCAGGCCGA AGCACGTCTT GCGCAGGCGC GTAATAACGT GCTGACAGAA
CAAACCAATC TGGACGATGC CAAAATCAAC TACATGAGCG TTGTGGGTAA AGTGCCGGAT
AATTTGGTGA TGCCCGATGC TTCTGTAATA AAACTCCCCG CGTCGTTGGA GGAAGCCCAG
CGCATCATGT TGGCTAACAG CCCAGCGCTG AAATCCGCAG AGTCAGATAT TGAAGCCACG
CAGCAGCAAT ATGAAGCGTC GAAATCAACG TTTTATCCAC GCCTCAACGT TGAGCTCTCT
CGAACAATGG ATAACAACGT TGACGGGACG CGCGGTCAAA ACAATGAATG GCAAGCGATG
CTGCGGATGC GCTACAACCT GTATGAAGGC GGTAGCAGCA AAGCCAACAT GGAATCAAAA
GCCTATCAGG TAAAAGAAGC GCAGGATGTG CGAAATAATG CCCTGCGCCT GCTGGGTGAA
GAGCTAAAGC TAGCCTGGTC AGCGTTAAAT AACTCGCGCC AGCAGTTGCC GATCGCCGCC
GAATATGCAG ACCGCAGTAT GAAAGTGCGT ACCGCCTATC AGAAACAATT TAGTCTGGGA
GAAAGGACGC TGTTGGACCT GCTGGACAGT GAAAACGAGC TGTTCACCGC ACAACGCCGT
CTGGTAGAAG TTCGCTTCAC CTCCCTCTAT ACCGAATACC GGATCGCATC ACGTATGGGA
GAGCTATTAA ATCGTTTGGC TATCCCAGCC CCTGATGCCG GTACCAGCTT GACAAACGTA
ACCACCCACG CAGAGTTGCC GAGCCTTAAT TAA
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| Protein sequence | MIRRYHFALL PFITVFSTAT YAETIQEAIK STLYTHPEVS ASINSRFSAE HDLRAAKGGY
LPSITLSAGV GREETDSPST RASINKRVEL SRQESSINLS QTVFDGFATS SEVGRQRATV
NSRAYKVLNT SESTALDTVQ VYLNVLQRQE FVRLAEANLA SHERIYDQIR LRSEQGVGRL
ADLDQAEARL AQARNNVLTE QTNLDDAKIN YMSVVGKVPD NLVMPDASVI KLPASLEEAQ
RIMLANSPAL KSAESDIEAT QQQYEASKST FYPRLNVELS RTMDNNVDGT RGQNNEWQAM
LRMRYNLYEG GSSKANMESK AYQVKEAQDV RNNALRLLGE ELKLAWSALN NSRQQLPIAA
EYADRSMKVR TAYQKQFSLG ERTLLDLLDS ENELFTAQRR LVEVRFTSLY TEYRIASRMG
ELLNRLAIPA PDAGTSLTNV TTHAELPSLN
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