Gene PC1_2995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2995 
Symbol 
ID8133950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3380693 
End bp3381718 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content56% 
IMG OID644866278 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003018554 
Protein GI253689364 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACATCG CCATTCTGGC GCTGCCGGGC AGTATGCAGT CGGCCATTTC CGGGCTTTCC 
GATATCTTCT GGATGGTCAA TCAAGCGCTG ATTACCCAGC CAGAGAGTGC TTCCTCCGCC 
TCACCGCTGT CTTTCGAAAC GTCCATCATC AGTGCAGACG GCAAACCCGT GCGTGATGCT 
CAGGGCAGGC TGATTCACGT AGACAGCTCG TTTGACGCGG TGGGTAAATC GGATGTCGTG 
CTGGCGACAG GGATGATGCT CGGCCCCGAT AAATTACCGA TGGCAACGGC ATCCGTTAGT 
GAATCGGCTA TTTGGCTCAG GGAGCAATAT CGACAGGGCT CGCTGATAGG TGGTGCCTGT 
GCGGGGGGCT TTATTCTGGC CGAAGCCGGG CTGCTGGATG GTCGCTTTTG CACCACAACA 
TGGTGGCTCT ACCACACCTT CAAGCAGAAA TACCCGAAGG CAAAACCGGT GTGGGGCAAA 
GCGCTGGAAG AACAAGATGG CATCATTACC ACCGGTGGGC CATTATCCTG GGTCGAGCTT 
GCCCTGCATA TTATTCACCG CAGTGGCGGA CCCAAGGTCG CAAAATTGGC AGCAGATATC 
GCGGTGGCGG ACAGCCAGCC GATCTCCCAA CGTATTTATG CCCCACAGGG ATTCATTAAC 
ACCGTACACC CTCTGCTGCT GCGCGCCGAA CAGCTCATCC GCTACGAAAA CCCGGCCATC 
ACCGCAGAAG AATTAGCCAG CGCCCTGAAT TTCAGCGACC GGACGCTGCA CCGCAAGCTC 
AAAGAACTCA CGGCGGAAAG CCCGAAAAAC TTTATTACCC GCGTCAGGAT CGAAATGGCC 
TGCCTGCTGC TTGAAAACCC GATGACCAAT ATCAAGCAGG TTGCCGCCGA ATGCGGTTAC 
AGTGAAGACA CCGCCTTCAG ACGCGCCTTT TCCCAGCAGA TGGAGATGAC GCCAACCCAG 
TTCAGAAAAT GGGCGCTGTT GAGGAATAAT ACACCGCGCG CGTTGGATAA TGAAAATGGG 
GGTTAA
 
Protein sequence
MHIAILALPG SMQSAISGLS DIFWMVNQAL ITQPESASSA SPLSFETSII SADGKPVRDA 
QGRLIHVDSS FDAVGKSDVV LATGMMLGPD KLPMATASVS ESAIWLREQY RQGSLIGGAC 
AGGFILAEAG LLDGRFCTTT WWLYHTFKQK YPKAKPVWGK ALEEQDGIIT TGGPLSWVEL 
ALHIIHRSGG PKVAKLAADI AVADSQPISQ RIYAPQGFIN TVHPLLLRAE QLIRYENPAI 
TAEELASALN FSDRTLHRKL KELTAESPKN FITRVRIEMA CLLLENPMTN IKQVAAECGY 
SEDTAFRRAF SQQMEMTPTQ FRKWALLRNN TPRALDNENG G