| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2962 |
|---|
| Symbol | |
|---|
| ID | 8133917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3342229 |
|---|
| End bp | 3344286 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644866245 |
|---|
| Product | Beta-galactosidase |
|---|
| Protein accession | YP_003018521 |
|---|
| Protein GI | 253689331 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1874] Beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000633248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAT TCCCCCCGCT AAGCAGCAAA GTCCCTGTTC TGCTACACGG TGCTGACTAT
AATCCTGACC AATGGCTGGA CAACCCAGAG GTTCTGGAAA AAGACATTGA AATGATGAAG
CAGACCCAGT GCAACGTCAT GTCCGTGGGT ATTTTCAGTT GGTCTGGGCT TGAGCCGGAA
GAAGGCCGCT ACGAATTTGG CTGGCTGGAC AGCCTCCTCG ACACGCTGTA TGCCAACGGC
ATCTTCGTTT TTCTGGCAAC GCCCAGCGGT GCGCGCCCGG CCTGGCTGTC GCAGAAATAC
CCTGACGTGC TGCGAGTGGG TAGCAACCGC GTACGGGCGC TGCACGGCGG TCGCCACAAT
CACTGCCTGA GCTCGCCGAA TTATCGCGAA AAAGTAAAAC AGATGAACAC CCAGTTGGCA
AAACGCTACT CGCACCATCC TGCGGTGATC GGCTGGCATA TTTCCAACGA ATACAGTGGC
GAGTGCCACT GCGATACCTG CCGCAGCACC TTCCAAAGCT GGCTGAAAGC CCGCTACGGT
ACGATTGACG CACTGAATAA AGCATGGTGG AGCACCTTCT GGAGCCACAC CTATACCGAC
TGGTCACAGC TAGAACCACC GTCGCCTGTC GGTGAGGTGT CGATTCACGG CCTGAATCTG
GACTGGAAAC GCTTTAACAC CTCACAGGTC AGTGATTTCT GTGCCGCAGA AATCGCACCG
CTCAAAGCCG AAAATCCGTC TCTGCCAACC ACGACGAACT TCATGGAATA CTTCTATGAT
TACGACTACT GGCAGTTGGC AAAGGTGATC GACTTCATCT CCTGGGACAG CTATCCGCTG
TGGCATAACG CGGAAGACGA CTGCGCGCTG GGTGCTTATA CCGCGATGTA TCACGACCTG
ATGCGTACGC TGAAAGGCGG AAAGCCCTTC TATCTGATGG AGTCAACGCC GAGCCTGACC
AACTGGCAGC CGATCAGCAA GTTGAAAAAG CCGGGTATGC ACATCCTGTC TTCGCTTCAG
GCCGTCGCGC ACGGTTCCGA CTCCGTGCAA TATTTCCAGT GGCGTAAGAG CCGCGGTTCC
GTCGAGAAAT TCCACGGCGC TGTCGTCGAT CATGTCGGGC ATATTGATAC CCGCGTCGGG
CGTGAAGTGC AGGAACTGGG TGATATCCTC AACAAACTCG CTCCAGTGGC AGGCAGCCGG
GTTGACGCCA AAGTCGCCAT CATTTTCGAC TGGGAAAGCC GCTGGGCGAT GGATAACGCT
CAAGGGCCGC GCAACGCCGG GCTGTTCTAC GAAAAAACCG TTACCGAACA TTATCGTACG
TTCTGGGAAC AGGGCGTGGC GGTGGACATC ATCAACGCCG ATGTCGATCT CAGCGGCTAT
CAGCTCGTGA TTGCGCCAAT GCTTTACATG GTACGCGATG GCTTTGCCGA ACGCGTCGAT
GCCTTCGTCA AACAGGGCGG CCGCTTCGTC ACCACCTACT GGTCTGGCGT CGTCAACGAA
ACCGATCTGT GCCATCTGAA CGGTTTCCCT GGCCCACTTC GTCCTATCAT GGGAGTTTGG
GCGGAAGAAA TCGACGGGCT GTACGATCAT GAAAGCAATA GCATCAGCGG CCTGAGCGGT
AACGAGCAAG GTCTGGTCGG CCCGTATCAG GTCACGCACC TGTGCGAGCT GATTCACCTT
GAGGGCGCGC GAGCGCTGGC GACCTATGAC GGCGATTTCT ACGCCGGACG TCCGGCCGTT
ACGGTCAATG ATTACGGCAA AGGTCAGGCC TATTACATCG CCTCACGCAA CGACCTCGCC
TTCCAGCGTG ATTTCTTCAC CACGCTGATA CAGACGCTGG CTCTACCGCG CGCGCTACCG
ACTGACCTGC CTTACGGGAT TGTCGCTCAT CGTCGCGATG ACGGGGAAAA CGAGTTTATC
TTCGTACAGA ACTACACGGC GACGCCGCAG CACATTACGC TGCCTGCCGC CTACGAAGAA
ATGACCACCG GCAGCACGCT GTCAGGATCC ATCACGCTGT CAGGCTACGG CTGCCGGATC
TTGCGCCGCA CGCTGTAG
|
|---|
| Protein sequence | MFKFPPLSSK VPVLLHGADY NPDQWLDNPE VLEKDIEMMK QTQCNVMSVG IFSWSGLEPE
EGRYEFGWLD SLLDTLYANG IFVFLATPSG ARPAWLSQKY PDVLRVGSNR VRALHGGRHN
HCLSSPNYRE KVKQMNTQLA KRYSHHPAVI GWHISNEYSG ECHCDTCRST FQSWLKARYG
TIDALNKAWW STFWSHTYTD WSQLEPPSPV GEVSIHGLNL DWKRFNTSQV SDFCAAEIAP
LKAENPSLPT TTNFMEYFYD YDYWQLAKVI DFISWDSYPL WHNAEDDCAL GAYTAMYHDL
MRTLKGGKPF YLMESTPSLT NWQPISKLKK PGMHILSSLQ AVAHGSDSVQ YFQWRKSRGS
VEKFHGAVVD HVGHIDTRVG REVQELGDIL NKLAPVAGSR VDAKVAIIFD WESRWAMDNA
QGPRNAGLFY EKTVTEHYRT FWEQGVAVDI INADVDLSGY QLVIAPMLYM VRDGFAERVD
AFVKQGGRFV TTYWSGVVNE TDLCHLNGFP GPLRPIMGVW AEEIDGLYDH ESNSISGLSG
NEQGLVGPYQ VTHLCELIHL EGARALATYD GDFYAGRPAV TVNDYGKGQA YYIASRNDLA
FQRDFFTTLI QTLALPRALP TDLPYGIVAH RRDDGENEFI FVQNYTATPQ HITLPAAYEE
MTTGSTLSGS ITLSGYGCRI LRRTL
|
|---|
| |