Gene PC1_2929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2929 
Symbol 
ID8133884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3303278 
End bp3304444 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content46% 
IMG OID644866212 
Productnucleotide sugar dehydrogenase 
Protein accessionYP_003018488 
Protein GI253689298 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1004] Predicted UDP-glucose 6-dehydrogenase 
TIGRFAM ID[TIGR03026] nucleotide sugar dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAG CGATTAGCGG AACAGGATAT GTCGGTTTAT CGAATGGATT ATTATTGGCA 
CAACAGCATC AGGTTGTGGC GTTAGATATT GTGGCTGAAA AAGTGGCGAT GTTGAATCAA
CGCAAATCGC CGATTAATGA CGCCGAGATT GAGCGTTTTT TACAACACGA AACGCTGAAT
TTTTCCGCTA CGCTGGATAA GCATGAAGCG TATGCCGATG CGCAGTTCGT GATTATCGCT
ACGCCGACAG ATTACGATCC ACACACTAAC TATTTCAACA CGTCGTCGGT AGAGGCGGTC
ATTCGCGATG TGCTGGCGAT TAACCCACAG GCCATTATGG TGATTAAATC GACGGTGCCT
GTTGGTTTCA CCGAGAAAAT CAGCCAGCAG TTGGATACCG ATAACATCAT TTTTTCGCCC
GAGTTTTTGC GCGAAGGAAA GGCGCTGTAC GACAACCTTT ACCCATCGCG GATTGTCGTG
GGTGAGCGGT CGGAAAGAGC CCGTTTTTTC GCTAACCTAT TGATGGAATG TGCATTAAAA
AAAGATATTC GCGTACTGTT TACCGACCCG ACAGAGGCCG AGGCGATAAA ACTGTTTGCG
AATACCTTCC TGGCGATGCG TGTCGCCTAC TTTAATGAAT TGGACAGCTA TGCTGAATCG
CTGGGGTTGA ATACCCGGCA GATTATTGAA GGTGTGTGCC TCGATCCGCG TATTGGCAAC
TACTACAACA ATCCTTCTTT CGGCTACGGC GGCTACTGTT TGCCGAAGGA TACCCGGCAG
CTTTTGGCTA ACTATCGTAC TGTTCCGAAT AACCTTATCA AGGCTATCGT GGACGCTAAC
CATACGCGGA AAGACTTCAT TGCCGATACG ATTATCCGGC GCCATCCGAA AACCGTCGGC
GTTCATCGCC TCATCATGAA AGCGGGGTCG GATAATTTTC GCTTTTCTTC CATTCAGGGC
ATTATGAAAA GGATAAAAGC GAAAGGAATC AATGTCGTGG TTTATGAACC TGGGATTGAT
GATGATGATT TCCTGGATTT CCCCGTCATT CACCAACTCG ATAGTTTTAA ACAACAGTGT
GACATTATTA TTACCAACCG CTATGCCGAC GAATTAAAAG ATGTAATAGG GAAGGTTTAT
ACAAGAGACT TATTTGGTGA GGATTGA
 
Protein sequence
MKIAISGTGY VGLSNGLLLA QQHQVVALDI VAEKVAMLNQ RKSPINDAEI ERFLQHETLN 
FSATLDKHEA YADAQFVIIA TPTDYDPHTN YFNTSSVEAV IRDVLAINPQ AIMVIKSTVP
VGFTEKISQQ LDTDNIIFSP EFLREGKALY DNLYPSRIVV GERSERARFF ANLLMECALK
KDIRVLFTDP TEAEAIKLFA NTFLAMRVAY FNELDSYAES LGLNTRQIIE GVCLDPRIGN
YYNNPSFGYG GYCLPKDTRQ LLANYRTVPN NLIKAIVDAN HTRKDFIADT IIRRHPKTVG
VHRLIMKAGS DNFRFSSIQG IMKRIKAKGI NVVVYEPGID DDDFLDFPVI HQLDSFKQQC
DIIITNRYAD ELKDVIGKVY TRDLFGED