Gene PC1_2877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2877 
Symbol 
ID8133832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3255289 
End bp3258702 
Gene Length3414 bp 
Protein Length1137 aa 
Translation table11 
GC content50% 
IMG OID644866164 
Producttype III restriction protein res subunit 
Protein accessionYP_003018440 
Protein GI253689250 
COG category[V] Defense mechanisms 
COG ID[COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGCAGT CTCTCAATTT CGAAATGTTG CGTAGCCAGT GGCCAGAACT GGCGGAACTT 
GCATGTATGG CAGAACGCTA TGTTCACGCC GATCCGGAAA GCAGTCTAGT GAAGCTGCGC
AACTACACCG AGTTGATGGT GCGCTGGTTG TATCGTCAGG AACGGTTACC GGAAGGGATT
AAAGCCAGCC TGTATGACTT GATGGGGGCA GATGTCTTTA CCAGCATGAT GCCGGAAGCC
ATCATCATGA AAATGGATGC GTTGCGTATT CACGGCAACC GCGCAGCGCA CGGCGGACGT
ATCAAAGCCA AAGATACCTA CTGGCTGCTT AAGGAAGCAT ATTTACTAGG TGTTTGGCTA
TATGTTCGTT ATGCCCACGG TAATGTTGAT GACTGCCCCA AATTCTCTCT CCCTCCGTTA
ACGCAATCTT CAGGTCGTGC AGATGAAAAA CGCCTGGAAG ACGCAATCAG AGCGCAGGAT
GAAAGCCGTG AACGCGAACT GGCATTACAA CGCGCACTAC AGCAAGAGCA GGAAAAGGCC
GAACACCTCA CTCAGCGCCT GAGTGAAGCC AGAGCGCGTA ACCAGCATGT TGCTGATATC
CTCTCTATTG ATGAAGCGGA AACCCGTCGC CGCCTGATTG ACTCCCGCCT GCTTGCTGCT
GATTGGAATG TAGGCGAAGA ACTTAAAAAT ACCGATCAGG TTACGCAGGA ACACCCTGTT
AAAGAACAGC CTACTATGAC CGGGGATGGT TATGCGGATT ATGTCTTGTG GGATGAGGCA
CACAAACCGC TAGCGGTGGT GGAAGCTAAA AAAACCAGCG TCAATGCCGA ACAGGGGCGA
ATGCAGGCCC GGTTATATGC GGACTGGCTG GAGAAAGAAT ACGGTCAGCG ACCGGTCATC
TTCTACACTA ACGGCTACGA TATTTGGCTG TGGGACGACA ACAAAACTCA TGGCTATCCA
CCGCGTCGGG TATTTGGCTT CTACAGTAAA GAAAGCCTGC AATATCTTAT TCAACAACGT
GAAACCCGTT TGCCCTTAAA TAGTGTGCCT CACGTTAAAG ACAAAGAGGG CAAAGCGGTT
GCTGGACGTT TGTATCAGCT TGAAACCATT GCCCGAGTCA GCGAACGCTT CACCGACAAA
TACCGGCAGT CGCTAATTGT TCAGGCGACT GGGACGGGTA AAACGCGTGT GGCGATTGCG
CTCAGTAAGC TAATGATTGA TGCCCGTTGG GTAAAACGAG TCCTGTTTCT TTGTGACCGC
AAAGAGTTAC GTAAACAGGC GGCGAATGCT TTCAATCAAT TTACCAATGA GCCATTGTAT
GTGGTCGGGA AATCGAAGAA AGCAGACAGG CAGAATGCCA GGATCTATAT CGCTACTTAC
CCTGGCATGA TGAAAATCAT GGATCATTTT GATGTCGGCT ATTTCGATCT GATCATTGCT
GATGAATCTC ACCGTTCGAT CTACAACGTT TACGGCGATC TGTTTAAGTA TTTTGATGCG
ATCCAGATTG GCTTGACGGC AACGCCGATC GACATGGTGA GTAAAACCAC TTTCGGTCTG
TTCGGTTGCG AAGGGCGCAT TCCTACTGCC AACTACAGCC TGGAAGATGC TATTGCAGAC
AACAATCTGG TGCCTTATGA GGTTGTTACG CACACTACGG AATTCCTGCG CGAAGGTATT
AAACGGGAAA AGTTAAGCGA TGCGCAAATC CGTGAGTTGG AAGAGCAGGG TATCGATCCC
AATACACTGG AATTTGAAGG CAAAGCGCTG GATGAGGCGA TCTACAACAA AGATACCAAC
CGCCATATCC TGCGTAATCT GATGGAAAAT GGCCTGAAAG ATCGGGATGG TCAACTTCCC
GGAAAGACCA TCATTTTTGC CCGCAACCAT AGACACGCGC TTTTATTGAA TAAATTGTTT
GACGACATGT ACCCGCAATT TGCCGGACGT TTCTGTCAGG TCATCGACAA CTACGATCCT
CGCGCTGAGC AATTAATTGA TGATTTTAAA GGGTTGGATG AAAGCACCAA CAAAGAGCTT
ACCATCGCGA TCTCCGTTGA TATGCTAGAT ACCGGCATTG ATGTCCCGGA AATTGTGAAT
CTGGTCTTTG CCAAGCCAGT CAAATCGAAA GTGAAGTTCT GGCAGATGAT TGGTCGAGGT
ACGCGCCTTT GTCCTGTGCT GCTCGGCAAC GATGACGACG GCAAGCCGCT GGATAAACAG
AAATTCCGCA TTTTCGATCA CTGGGGCAAT TTTGAGTATC ACGAGCTACA TACCGAAGAG
GCCGAAGTCA CCGTGACTAA ATCGCTAGCT CAAAAACGTT TCGAAGCGTG GGTGATGCTG
GGGGGCGCGG CACAGCGTAA ATTCGACAAG CAGGCGGTGA ATTTAGTAGC TCGCCAGCTC
CGTGAGCAAA TCAACTCTCT GGATGAAAAA TCAATTGCCG TACAGGAAAA GTGGCAGCAA
AAAGCGCAGT ACAGCGATGA AAAGGTGCTA CGTCAGCTTT CCCCGAAAAC ACAGCAGGAT
CTGTTATCCG TTCTGGCCCC GCTGATGCAG TGGCTGGACG TGCGCGGGCA AAGCGACGCC
ATGCGTTTCG ATATGGATAT TCTGGCGGCA CAAACCGCCC GTTATACTAA CCCGGAGGAG
CTGGATGTGC TCTGGCCGGT AATCGTGGAG AAAGTGGAGC GTCTGCCGCC CCATCTGGCA
CAGGTACAGC AGCAGGGACA GCGGATTAAT CAGCTTCGCG ACTTAGGCTG GTGGAAGCAG
GCAAGTCTGG AAGAGCTGGA GGATATCCGC ATTCATCTGC GTGGTATTAT GCACCTGATG
GAAAAAGATC CGACTCCCCG TCCCAATCCG GTACAGGTGG ATATCACTGA AGATGCAGGC
CAGATTCAGA CGGAAACCCG CAAAACCAAC ATCCGCTCGA TTGATTTCAA ACTTTATCGC
CAGCAGGTTC AGGGCGCGTT GGAGCCGTTG TTCCAGCAAA ATCCAGTACT GAAGAAAATC
CGCAACGGCG AGCCGGTAAC GCAGAGTGAG CTAGATGAGC TGGCAAAGCT GGTTCTTATC
CAGAACCCGA ATGTTGATAT CCGGGCGCTG AAAGAGTTCT ACCCGCAGGC AACTTCAAGC
CTGGATAAAC TGTTACGTAC CATAATCGGG ATGGACAGTG ACGCGGTGGA AGTGCGTTTT
GCACAGTTCG CCGCTGACAA CAGCCTGACC AGCCAACAAT TGCGCTTCCT GTCGCTGCTG
AAAAATCATA TCCGTGATTA CGGCACCATT GAAATGCGGC AGCTCTTTGA ACAGCCGTTT
ACGCATATCC ACAACGAAGG CGTTACTGGC GTATTCCCGG ATGTAGAGCA GATCGCCCGG
TTGCAAAAGA TAGTCGAAGA GTTGGGTGTT GTGACCGACA CCGTGAAGGT ATAA
 
Protein sequence
MEQSLNFEML RSQWPELAEL ACMAERYVHA DPESSLVKLR NYTELMVRWL YRQERLPEGI 
KASLYDLMGA DVFTSMMPEA IIMKMDALRI HGNRAAHGGR IKAKDTYWLL KEAYLLGVWL
YVRYAHGNVD DCPKFSLPPL TQSSGRADEK RLEDAIRAQD ESRERELALQ RALQQEQEKA
EHLTQRLSEA RARNQHVADI LSIDEAETRR RLIDSRLLAA DWNVGEELKN TDQVTQEHPV
KEQPTMTGDG YADYVLWDEA HKPLAVVEAK KTSVNAEQGR MQARLYADWL EKEYGQRPVI
FYTNGYDIWL WDDNKTHGYP PRRVFGFYSK ESLQYLIQQR ETRLPLNSVP HVKDKEGKAV
AGRLYQLETI ARVSERFTDK YRQSLIVQAT GTGKTRVAIA LSKLMIDARW VKRVLFLCDR
KELRKQAANA FNQFTNEPLY VVGKSKKADR QNARIYIATY PGMMKIMDHF DVGYFDLIIA
DESHRSIYNV YGDLFKYFDA IQIGLTATPI DMVSKTTFGL FGCEGRIPTA NYSLEDAIAD
NNLVPYEVVT HTTEFLREGI KREKLSDAQI RELEEQGIDP NTLEFEGKAL DEAIYNKDTN
RHILRNLMEN GLKDRDGQLP GKTIIFARNH RHALLLNKLF DDMYPQFAGR FCQVIDNYDP
RAEQLIDDFK GLDESTNKEL TIAISVDMLD TGIDVPEIVN LVFAKPVKSK VKFWQMIGRG
TRLCPVLLGN DDDGKPLDKQ KFRIFDHWGN FEYHELHTEE AEVTVTKSLA QKRFEAWVML
GGAAQRKFDK QAVNLVARQL REQINSLDEK SIAVQEKWQQ KAQYSDEKVL RQLSPKTQQD
LLSVLAPLMQ WLDVRGQSDA MRFDMDILAA QTARYTNPEE LDVLWPVIVE KVERLPPHLA
QVQQQGQRIN QLRDLGWWKQ ASLEELEDIR IHLRGIMHLM EKDPTPRPNP VQVDITEDAG
QIQTETRKTN IRSIDFKLYR QQVQGALEPL FQQNPVLKKI RNGEPVTQSE LDELAKLVLI
QNPNVDIRAL KEFYPQATSS LDKLLRTIIG MDSDAVEVRF AQFAADNSLT SQQLRFLSLL
KNHIRDYGTI EMRQLFEQPF THIHNEGVTG VFPDVEQIAR LQKIVEELGV VTDTVKV