Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2824 |
Symbol | |
ID | 8133777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3198219 |
End bp | 3199502 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644866112 |
Product | long-chain fatty acid outer membrane transporter |
Protein accession | YP_003018390 |
Protein GI | 253689200 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2067] Long-chain fatty acid transport protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.489519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCAGA AAAACCTGTT CAAACAATCC ACAATTGCTG TTGCGGTGGC CCTGTTTTCA GCAAATGTGT CAGCAGCTGG TTTCCAGCTA AATGAATACT CCTCATCGGG TCTGGGACGT GCATTTTCTG GTGAAGGTGC TGTAGCCGAC AATGCGGCCT CCGGCAGCCG TAACCCGGCG ACCATGACCA TGTTTGACCG CCCGTCCTTC TCAGGTGGTG TCACCTATAT CAACCCGGAT ATCGATGTTC AGGGGAAAAA CTCTCTGGCA GGGCAAAATA CCAGCGCCAA GAACATCGCA CCACACGCCT GGGTGCCAAA CCTGCATTTC ATCATGCCGC TGGATGATCA GTGGGCGATT GGTGCTTCTG CGACCACCAA CTACGGTTTG GCAACGGAAT TCAATGATAC TTATGCCGCA GGTTCGATCG GCGGCAAAAC CGATCTATTG ACGTCAAACC TGAACCTGAG CGCCGCTTAT CGTCTGAACC AACATTTTAG CTTCGGTTTA GGTGTTAACG CCGTCTATGC CGATGCGAAA ATTGAGCGTC GTGCTGGTGA GCTTGCCGCT GGTGGTTTGC AGCCGTCTTC TGAGTTAGTA CACATGGAAG GCAAAGAATG GGGCTACGGT TGGAATGCCG GTATCTTGTA TGAAGTCGAC GAAAATAACC GCTTCGGCTT CACCTACCGT TCAAAAGTTA AGATCGATTT TGATGGCGAT TACCATAGTG CCAAACCGTC CATCGCCCCA GGTCTGCCTG TAGGGACAAG TGGTGCAACG ATCCCTGGCA AGCTGACACT GAATCTGCCA GAAATGTGGG AAGCTTCAGC CTATCATCGT GTAGCACCGA AATGGGCCGT TCACTACAGT CTGGCCTATA CCAGTTGGAG CCAGTTCCAG GAGTTGAAAG CGACTGGCAA CAACGGTCAG ACGTTGTTCC ATAAAGATGA AAGTTTCCGT GATGCTTACC GTATCGCACT GGGTACCACC TACTATCATG ATGATAACTG GACATTCCGT GGCGGTATCG CGTTTGATGA CAGCCCGGTA CCAGCCGACA AACGCTCTAT TTCTATCCCG GATCAGGACC GTTTCTGGTT GAGCGCTGGT ACCACCTATG CGTTTAATAA AGACGCCTCT GTTGATGTTG GTGTGTCCTA CATGCACGGC AAACAAGTTG ATATTAGCGA ACCTATCTCT GATGTGGCCG GTTCGCCACG CTATAACTTT ACCTCTAAAG GTAAAGCTTG GCTGTACGGC GTAAACTTCA ACTATGCGTT CTAA
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Protein sequence | MNQKNLFKQS TIAVAVALFS ANVSAAGFQL NEYSSSGLGR AFSGEGAVAD NAASGSRNPA TMTMFDRPSF SGGVTYINPD IDVQGKNSLA GQNTSAKNIA PHAWVPNLHF IMPLDDQWAI GASATTNYGL ATEFNDTYAA GSIGGKTDLL TSNLNLSAAY RLNQHFSFGL GVNAVYADAK IERRAGELAA GGLQPSSELV HMEGKEWGYG WNAGILYEVD ENNRFGFTYR SKVKIDFDGD YHSAKPSIAP GLPVGTSGAT IPGKLTLNLP EMWEASAYHR VAPKWAVHYS LAYTSWSQFQ ELKATGNNGQ TLFHKDESFR DAYRIALGTT YYHDDNWTFR GGIAFDDSPV PADKRSISIP DQDRFWLSAG TTYAFNKDAS VDVGVSYMHG KQVDISEPIS DVAGSPRYNF TSKGKAWLYG VNFNYAF
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