| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2770 |
|---|
| Symbol | |
|---|
| ID | 8133723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3142645 |
|---|
| End bp | 3144444 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644866058 |
|---|
| Product | bifunctional NADH:ubiquinone oxidoreductase subunit C/D |
|---|
| Protein accession | YP_003018336 |
|---|
| Protein GI | 253689146 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C
[TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.393942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATT TAACGACACA CGATCTCGCT CAGCCAGGCT GGCAAACCCG CGATCACCTT
GACGATCCGG TCGTTGGCGA GCTGTGTAAC CGTTTTGGAC CAGATGCATT TACTGTACAA
GCAACCCGCA CAGGTATTCC CGTCGTGTGG GTCAAACGTG AGCAATTACT GGACGTTGTC
GCATTCCTGA AAAAACAGCC AAAGCCTTAT GTTATGCTGT TTGACCTGCA CGGTATGGAT
GAGCGTTTGC GCACCCACCG TGAAGGCCTA CCTGCCGCCG ACTACTCCGT CTTTTATCAC
ATCATTTCCA TCGAGCGTAA CCGCGACATC ATGCTGAAAG TCGCGTTGGC CGAGAGCGAT
CTGCACGTAC CGACCGTGAC CAAACTGTTC CCGAATGCCA ACTGGTATGA GCGTGAAACG
TGGGAAATGT TTGGTATTAC GTTTAACGGC CACCCGCACC TGACGCGCAT CATGATGCCG
CATACGTGGG AAGGGCACCC GTTGCGTAAA GATTATCCAG CGCGTGCGAC CGAATTCGAT
CCTTTCGTGC TGACCAAGCA GAAAGAAGAT CTGGAAATGG AATCGCTGAC GTTCAAACCG
GAAGAATGGG GAATGAAGCG CGGCACTGAA AATGAGGACT TCATGTTCCT CAACCTCGGT
CCAAACCACC CGTCTTCACA CGGTGCCTTC CGTATTATCC TGCAGTTGGA TGGCGAAGAA
ATCGTCGACT GCGTGCCTGA TGTGGGTTAC CACCATCGCG GCGCGGAGAA AATGGGCGAA
CGCCAGTCCT GGCACAGCTA CATTCCTTAT ACCGACCGTA TTGAATACCT TGGCGGCTGC
GTTAACGAAA TGCCGTACGT GCTTGCCGTA GAAAAACTGG CGGGCATTGA GGTACCCGAT
CGCGTCAAAA CGATTCGCGT GATGTTGTCT GAGCTGTTCC GCATTAATAG TCACCTGCTG
TATATCAGTA CCTATATTCA GGACGTCGGT GCGATGACAC CGGTGTTCTT TGCGTTTACA
GACCGCCAGA AAATTTACGA TTTGGTTGAA GCGATTACCG GCTTCCGTAT GCACCCGGCC
TGGTTCCGCA TCGGCGGGGT GGCGCACGAT CTGCCACGCG GTTGGGAGCG TCTGCTGCGT
GAATTCCTCG ACTGGATGCC GAGCCGCTTG GATACCTATG TTAAGGCTGC ATTGCAGAAC
ACCATCCTGA AAGGCCGTAC TCAGGGCGTT GCCGCTTACA ATGCGAAAGA AGCGTTGGAT
TGGGGCGTAA CCGGTGCGGG CCTACGTGCG ACAGGTATTG GTTTTGACGT GCGCAAATGG
CGTCCGTATT CCGGCTATGA AAACTTCGAC TTTGAAGTGC CTGTCGGCGA TGGCATCAGC
GATTGCTATA GCCGCGTGAT GCTGAAGGTT GAAGAGCTGC GCCAAAGCCT GCGTATTCTG
GATCAGTGTC TCAAGAACAT GCCGGAAGGG CCGTTCAAAG CGGATCACCC GCTGACGACG
CCACCGCCAA AAGAGCGCAC ATTGCAGCAT ATCGATACGC TGATTAACCA CTTCCTTCAG
GTTTCCTGGG GCCCGGTTAT GCCTGCCAAT GAATCATTCC AGATGGTTGA GGCAACAAAG
GGCATCAACA GCTATTACCT GACCAGTGAC GGCGGCACGA TGAGCTACCG TACCCGTATT
CGCACGCCGA GCTATGCGCA TCTGCAACAG ATTCCTTCTG TTATTCGCGG ATGTCTGGTA
TCCGATCTGA TCGTTTACCT CGGCAGTATT GATTTCGTTA TGTCAGATGT GGACCGCTAA
|
|---|
| Protein sequence | MTDLTTHDLA QPGWQTRDHL DDPVVGELCN RFGPDAFTVQ ATRTGIPVVW VKREQLLDVV
AFLKKQPKPY VMLFDLHGMD ERLRTHREGL PAADYSVFYH IISIERNRDI MLKVALAESD
LHVPTVTKLF PNANWYERET WEMFGITFNG HPHLTRIMMP HTWEGHPLRK DYPARATEFD
PFVLTKQKED LEMESLTFKP EEWGMKRGTE NEDFMFLNLG PNHPSSHGAF RIILQLDGEE
IVDCVPDVGY HHRGAEKMGE RQSWHSYIPY TDRIEYLGGC VNEMPYVLAV EKLAGIEVPD
RVKTIRVMLS ELFRINSHLL YISTYIQDVG AMTPVFFAFT DRQKIYDLVE AITGFRMHPA
WFRIGGVAHD LPRGWERLLR EFLDWMPSRL DTYVKAALQN TILKGRTQGV AAYNAKEALD
WGVTGAGLRA TGIGFDVRKW RPYSGYENFD FEVPVGDGIS DCYSRVMLKV EELRQSLRIL
DQCLKNMPEG PFKADHPLTT PPPKERTLQH IDTLINHFLQ VSWGPVMPAN ESFQMVEATK
GINSYYLTSD GGTMSYRTRI RTPSYAHLQQ IPSVIRGCLV SDLIVYLGSI DFVMSDVDR
|
|---|
| |