| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2680 |
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| Symbol | |
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| ID | 8133633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3039313 |
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| End bp | 3040785 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644865968 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003018246 |
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| Protein GI | 253689056 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATCCC TCCGTACCCT TGCTTTGGTG GTAACGGCTG GTGCAATAGC GGGTTGCGCG
GTTGGACCGG ATTATCACCG TCCGGACGCG CCACTCGCGG ATCGTTATCA GACGCAATCT
GCCATAAAAT CGTCTTTAGC AGAGCAAGGA AACGTCACTC AGGCAGCCAA CCTTGCCGTC
TGGTGGGAAA GCTTTAATGA TCCCTTACTG AGTGAGTTAG TTTCAAGAGC ACTTACACAG
AATCTTGATT TGGCCCAGGC ATCCGCACGG ATGAGTCAGG CGCGCGCCGG ACTTGGCACA
GCAACTACGG CGCTGCTGCC CTCGGGCAAC ATCAGCGGAC AAGCCGCCCG CGCCTACCAG
TCGGTTGAAA CCGCGCAAGG CCAGCTACTC AACGCGGTTC CTGGCTATAA CCGTTACGGC
AATGCTTATG AAACCGACCT CAACGCCAGT TGGGAAATTG ATGTATTCGG TGGACTAAGA
CGTGATCGTC AGGCGGCACT GGCTGACTAT CAGGCTTCAG AAGCCGGTGT AACCGCCACT
CGTCTGGCAA TTGCCGCTCA GACAGCCGAT ACCTATATCA CTCTGCGTGG ATTACAAACG
CGCCTGGCGA TCGCCAACAT GCAGGTCAAT ACACAGCAAG AACTGCTGGA TAAGGTACAG
CGGCTCCATA GCAAAGGGCT CGCCGCCGAG TATCAGGTTC GTCAGACGGA GGGCGCGCTT
TCGCAGGTTC AGGCCACCGT GCCTGCGATC CAGACCGGGA TCGATGCCGC AATGAACGCG
TTGGATGTCA TACTCGGTAC GCCTCCCGGT ACGCATCAAG TCCAACTGTC TGCCTCAGGT
GACATTCCAC AACCGCCCTC GCTCATAGCA ACGGGTACAC CTGCCGACCT GCTACGCCGC
AGGCCGGATA TTATCGTGGC CGAACGCCAT CTCGCGGCGT CCAACGCCCG CATCGGGGTA
GCCATCAGCG AGTATTACCC TAAATTCTCA CTCAACGCAC TACTCGGCAG CGCCACATCG
GTGTCGAGCG GCAACCTGTT CTCCAGCGGC GCCAGCCAAT CGGCAGGCGT ATTGGGACTA
CGCTGGCGGC TCTTCGATTT CGGCCGCATT AACGCTCAGA TCGATCGGGC TAAAGGGCAG
GAAGCCGAAG CGCTCGCGGC TTACCGCCTG TCGGTATTAC GCGCGACCGA AGATGTGGAA
AACGCCTTGT CGGCCGTAGT CAATCGCGAG GCCCAGTCCG CAACGTTAAC CGCAGGGGAA
ACCGCGTTGA CCAGCGCGCG GCAGTCGTCC TTTATCGCCT ATCAGAAAGG GACTGCCAGC
CTGATTGATG TCCTCCATGC CGATGAAACC CTGCTGCAAG CTTCCGATGC TCGGGCTCAG
GCCCAAACAG AAGCGGCGCG CGCGGCCATC GCCGCCTTCA AGGCGCTCGG CGGCGGCTGG
CAGCCTCCGG AAACCACCGC GAAGACGTCA TAA
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| Protein sequence | MLSLRTLALV VTAGAIAGCA VGPDYHRPDA PLADRYQTQS AIKSSLAEQG NVTQAANLAV
WWESFNDPLL SELVSRALTQ NLDLAQASAR MSQARAGLGT ATTALLPSGN ISGQAARAYQ
SVETAQGQLL NAVPGYNRYG NAYETDLNAS WEIDVFGGLR RDRQAALADY QASEAGVTAT
RLAIAAQTAD TYITLRGLQT RLAIANMQVN TQQELLDKVQ RLHSKGLAAE YQVRQTEGAL
SQVQATVPAI QTGIDAAMNA LDVILGTPPG THQVQLSASG DIPQPPSLIA TGTPADLLRR
RPDIIVAERH LAASNARIGV AISEYYPKFS LNALLGSATS VSSGNLFSSG ASQSAGVLGL
RWRLFDFGRI NAQIDRAKGQ EAEALAAYRL SVLRATEDVE NALSAVVNRE AQSATLTAGE
TALTSARQSS FIAYQKGTAS LIDVLHADET LLQASDARAQ AQTEAARAAI AAFKALGGGW
QPPETTAKTS
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