Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2616 |
Symbol | |
ID | 8133564 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2982784 |
End bp | 2983716 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644865899 |
Product | hypothetical protein |
Protein accession | YP_003018182 |
Protein GI | 253688992 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism [R] General function prediction only |
COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0513326 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAAAAGC ACACGCATTT TTTTTCTGAT AAAAAAATTG TTTTTTTTGT CGCCACATTA TGCTGTTTGC TCTGGGGAAG TGCTTATCCG GCAATTAAAA ATGGTTATGA ACTGTTTCAC ATTGCAGATA ATGATATTCC TGGAAAACTC GTTTTTGCAG GCTACCGGTT CGCCTTCGCC GGGCTGTTGC TGTTAGTGCT GGCTGTGTTA AGCGGGCGGT CTATCGGGCG TTTTCAGCGT GGGCAGTTAG TCCAGTTGAG CATCCTGGGA ATATTCCAGA CATCATTGCA GTATGTTTTT TTCTATATCG GTCTGGCTTA TACCACAGGC GTTAAAGGCT CGATCATGAA TGCAACCAGT ACTTTTTTTA GCGTGCTGCT TGCTCATTAT TTGTACCAGA ATGATAAATT AAATATCAAC AAGCTAGTGG GTTGTATATT AGGCTTTGTC GGTGTGATGG TCGTTAATAT CAACAGTAAC GGCATGAGCA CCAGTTTTAC GTTGTTAGGT GATGGGTTCG TTGTTATTGC CGCATTTATT TTGTCTGCAT CTACTATATA TGGTAAGCGG ATATCGCAAA CCATGGATCC AACTGTAATG ACAGGTTATC AATTGGCTAT TGGTGGGATC ATTTTAACGA TATCGGGGTA CTGTACAGGT GGAACACTCA TCATACCTGA TTGGAAAGCT GTGCTGATGC TGGGCTATCT TATTTTGCTC TCTTCTGTCG CTTTTTCATT ATGGAGCCAA TTGCTGAAAT ATAATCGAGT TGGTATGGTC GCACCATTTA ATTTCCTCAT CCCGGTATCT GGTACGCTGC TTTCAGCGCT GTTCCTTAAT GAAAGCATCC TAGAGTGGAA ATATTTCTTT GCACTTGTCT TGGTTTGTTC AGGTATTTGG TTGGTTAACC GAGTGGTGAA AAGCGCTCGC TAA
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Protein sequence | MEKHTHFFSD KKIVFFVATL CCLLWGSAYP AIKNGYELFH IADNDIPGKL VFAGYRFAFA GLLLLVLAVL SGRSIGRFQR GQLVQLSILG IFQTSLQYVF FYIGLAYTTG VKGSIMNATS TFFSVLLAHY LYQNDKLNIN KLVGCILGFV GVMVVNINSN GMSTSFTLLG DGFVVIAAFI LSASTIYGKR ISQTMDPTVM TGYQLAIGGI ILTISGYCTG GTLIIPDWKA VLMLGYLILL SSVAFSLWSQ LLKYNRVGMV APFNFLIPVS GTLLSALFLN ESILEWKYFF ALVLVCSGIW LVNRVVKSAR
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