| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2557 |
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| Symbol | |
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| ID | 8133504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2922872 |
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| End bp | 2924905 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644865840 |
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| Product | choline transport protein BetT |
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| Protein accession | YP_003018124 |
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| Protein GI | 253688934 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.592172 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCAT CAGAAACAAC CACCCAGCAG GATCGCCTGA ATCCTGTCGT GTTCTACACA
TCAGCGGGAC TTATCCTGAC CTTCTCGCTG ATGACCATGT TGTTTAACAA AGAGGCAAAT
GCCTGGATTA CCCACGCGCT CAACTGGGTT TCCGCCACCT TTGGTTGGTA TTACCTGCTA
GCCGCCACGC TCTACATCGT TTTCGTCATC TTCATCGCCT CGTCTCGCTT TGGCTCGATC
AAGCTCGGGC CGGAGCAGTC GAAACCTGAA TTTAGCCTGA TGAGCTGGGC AGCAATGCTG
TTTGCGGCGG GGATCGGCAT CGATTTAATG TTCTTTTCCG TCGCGGAACC CATTACGCAA
TATATGATGC CGCCGGAAGG ACAAGGCCAG ACGATGGAGG CAGCGCGGCA GGCTATGGTC
TGGACGCTGT TTCACTACGG GCTCACAGGC TGGTCAATGT ACGCGCTGAT GGGAATCGCG
CTGGGCTACT TCAGCTACCG GTATAATTTG CCGCTGACCA TTCGCTCTGC TCTGTATCCC
ATTTTTGGTA AACGCATCAA TGGCCCGATT GGACACAGCG TCGATATCGC GGCCGTACTC
GGAACCATCT TCGGTATCGC CACTACGCTG GGTATCGGCG TCGTTCAGCT TAATTACGGG
CTGAAAGTCC TGTTCCAGAT TCCTGAGAAC CTTACCGTTC AGGCCTCACT CATCCTGCTT
TCCGTAATCA TGGCGACCGT TTCCGTGACG TCTGGCGTCA ATCGTGGCAT TCGCTTCCTT
TCCGAGCTGA ACGTCCTGCT TGCACTCGGT TTGATTCTCT TTCTGCTCTT CTGGGGTGAT
ACCGAGTTTC TGCTAAACGC GCTGGTGTTG AACGTCGGGG ATTACATCAA CCGCTTTACT
GGTATGACGC TCAACAGCTT TGCGTTCGAT CGCCCGACCG AGTGGATGAA TAGCTGGACG
CTGTTCTTCT GGGCGTGGTG GGTCGCGTGG GCACCGTTTG TCGGGCTGTT TCTGGCACGT
ATCTCGCGCG GCAGAACGAT TCGGCAGTTT GTCGTCGGCA CGCTGATCAT CCCGTTTGTC
TTTACCCTGC TGTGGCTCTC CATCTTTGGT AACAGTGCGC TTTATCAGGT AATTCACGGT
AATCTGGACT TTGCGAACGA AGTCATGCAG CACCCGGAAC GTGGGTTCTA CAGCCTGCTG
GCACAGTACC CCGGCTTCAG CCTGAGCGCC TCTGTCGCGA CCATTACTGG CCTGCTGTTT
TATGTTACCT CTGCCGATTC CGGTTCGCTG GTACTGGGCA ATTTCACCTC TCGCCTTGGT
GACATCAACA ACGATGCACC AAACTGGCTG CGGATTTTCT GGTCAGTCGC GATTGGCCTG
TTGACGCTGG GTATGTTGAT GACAAACGGT GTGTCAGCAT TACAGAACAC GACCGTCATC
ATGGGATTGC CGTTTAGCTT TGTGATGTTC TTTATTATGG CGGGGTTATA TAAATCACTG
CGGGTTGAGG ATTACCGTAA AGCCAGCTCC TTGCAAACCT CAGCGCCGAT GCCAATTTCA
GGCGACGATC GCCTGAACTG GAAACAACGC ATCTCACGCG TCATGAATTT CCCTGGCACA
ACGCATACAC AGAAAATGCT GGATAACGTC TGTAAAGCGG CGATGGAGGA TGTTGCACGT
GAACTGCGTC TGCGCGGTGC CAATGTTGAA GTCAACGAAT TACCGCCTGT CGAAGATGAA
CGTCTGAATC ACCTCGAACT ATTGGTGGAT TTGGGTGATG AGCAGAATTT CCTCTACCAA
ATTTGGCCAC AGCGCTACAG CGTCCCAGCG TTTACCTACC GTGCCCGCTC AGGGAAATCA
GATTATTACC GCCTTGAAAC CTTCCTGTTG GAAGGAAGTC AGGGAAATGA TCTGATGGAC
TACAGCAAGG AACAGGTGAT TAACGACATT TTGGATCAGT ACGAACGCCA CCTGAATTTT
CTTCATCTTA ATCGAGAAGC ACCCGGCAAT ACGCTAACCT TCCCGGATGC ATAA
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| Protein sequence | MPASETTTQQ DRLNPVVFYT SAGLILTFSL MTMLFNKEAN AWITHALNWV SATFGWYYLL
AATLYIVFVI FIASSRFGSI KLGPEQSKPE FSLMSWAAML FAAGIGIDLM FFSVAEPITQ
YMMPPEGQGQ TMEAARQAMV WTLFHYGLTG WSMYALMGIA LGYFSYRYNL PLTIRSALYP
IFGKRINGPI GHSVDIAAVL GTIFGIATTL GIGVVQLNYG LKVLFQIPEN LTVQASLILL
SVIMATVSVT SGVNRGIRFL SELNVLLALG LILFLLFWGD TEFLLNALVL NVGDYINRFT
GMTLNSFAFD RPTEWMNSWT LFFWAWWVAW APFVGLFLAR ISRGRTIRQF VVGTLIIPFV
FTLLWLSIFG NSALYQVIHG NLDFANEVMQ HPERGFYSLL AQYPGFSLSA SVATITGLLF
YVTSADSGSL VLGNFTSRLG DINNDAPNWL RIFWSVAIGL LTLGMLMTNG VSALQNTTVI
MGLPFSFVMF FIMAGLYKSL RVEDYRKASS LQTSAPMPIS GDDRLNWKQR ISRVMNFPGT
THTQKMLDNV CKAAMEDVAR ELRLRGANVE VNELPPVEDE RLNHLELLVD LGDEQNFLYQ
IWPQRYSVPA FTYRARSGKS DYYRLETFLL EGSQGNDLMD YSKEQVINDI LDQYERHLNF
LHLNREAPGN TLTFPDA
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