| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2556 |
|---|
| Symbol | |
|---|
| ID | 8133503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2921932 |
|---|
| End bp | 2922519 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644865839 |
|---|
| Product | transcriptional regulator BetI |
|---|
| Protein accession | YP_003018123 |
|---|
| Protein GI | 253688933 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03384] transcriptional repressor BetI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.160785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAAAG TCGGAATGCA GCCCATCAGA CGGCAGCAGC TCATCGAAGC GACACTGGCC
GCGATTAACG ATGTGGGGAT GCATGATGCC TCGATCGTAC AGATTGCCCG ACGTGCGGGT
GTGTCGAATG GGATCATCAG CCATTACTTC CGCGATAAAA ATGGCTTACT GGAAGCGACG
ATGCGCTACC TGATAAGTCA TCTGGGGCTG GCGGTGAAAT CAAGGCTACT GAGCCTGACA
GAAAACACGC CTCGTGCACG TTTACGGGCG ATTGTTCAGG GAAATTTTGA TGATAGCCAG
ACGAATAGCG CGGCGATGAA AACCTGGCTG GCGTTTTGGG CCAGTAGCCT GCATTCCCCC
ATGCTCCATC GGCTACAGCA GGTTAACGAT CGGCGGCTTT ACTCCAACCT GTGCATCGAG
TTTAGCCATT GCTTGCCGAA AGATAACGCG CGTATTGCGG CAAAAGGGCT AGCGGGACTG
ATCGATGGGC TGTGGCTGCG CAGTGCGCTA AGTCATGACG CCTTCAACCG CGAAGAAGCA
TTGAGCATTG CCTACGACTA TATCGAGCAG CAGCTCACTC GCACGTAA
|
|---|
| Protein sequence | MPKVGMQPIR RQQLIEATLA AINDVGMHDA SIVQIARRAG VSNGIISHYF RDKNGLLEAT
MRYLISHLGL AVKSRLLSLT ENTPRARLRA IVQGNFDDSQ TNSAAMKTWL AFWASSLHSP
MLHRLQQVND RRLYSNLCIE FSHCLPKDNA RIAAKGLAGL IDGLWLRSAL SHDAFNREEA
LSIAYDYIEQ QLTRT
|
|---|
| |