Gene PC1_2511 details

Gene Information

• Locus tag: PC1_2511
• Symbol: rne
• ID: 8133457
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2877152
• End bp: 2880493
• Gene Length: 3342 bp
• Protein Length: 1113 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644865793
• Product: ribonuclease E
• Protein accession: YP_003018078
• Protein GI: 253688888
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00474333
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAA TGTTAATTAA CGCAACTCAG CAGGAAGAGT TGCGTGTTGC CTTGGTTGAT 
GGTCAACGGC TGTATGATTT GGATATCGAA AGTCCGGGTC ATGAGCAGAA GAAAGCAAAT 
ATCTACAAAG GTAAAATCAC TCGTATCGAA CCCAGTCTTG AAGCGGCTTT TGTTGATTAC 
GGCGCAGAAA GACATGGTTT CCTCCCTCTT AAAGAAATCG CCCGCGAATA TTTCCCCAGC 
AACTATGCTT CCCATGGTCG TCCTAACATT AAAGACGTGT TACGTGAAGG TCAGGAAGTC 
ATTGTTCAGG TAGACAAAGA AGAGCGTGGC AACAAAGGCG CAGCGCTGAC TACCTTTATC 
AGCCTGGCGG GTAGCTATCT GGTCTTAATG CCGAATAATC CGCGCGCCGG TGGAATCTCC 
CGTCGCATCG AAGGTGACGA TCGCACCGAG CTCAAAGAAG CGCTGGGTTC GCTGCAACTG 
CCTGATGGCA TGGGTCTCAT TGTTCGTACT GCTGGTGTGG GTAAATCCGC TGAAGCCCTG 
CAATGGGATC TGGCTTTCCG TCTGAAACAC TGGGACGCGA TCAAAAAAGC CGCCGAAGGC 
CGCCCTGCAC CGTTCCTGAT TCATCAGGAA AGTAACGTGA TTGTCCGCGC TTTCCGTGAC 
TATCTGCGCC CGGACATTGG CGAAATTCTG ATTGATAACC CCAAAATTCT CGATCTGGCG 
AAAGAACACA TTTCTGCGCT GGGTCGTCCT GATTTCAGCA GCAAAATCAA ACTATACAGT 
GGTGAAATCC CGCTTTTCAG CCACTATCAG ATTGAATCGC AGATCGAATC GGCTTTCCAG 
CGTGAGGTTC GCCTGCCGTC CGGCGGTTCT ATCGTTATCG ATACCACCGA AGCGCTGACG 
GCGATTGATA TCAACTCTGC CCGTGCAACG CGCGGTGGCG ATATCGAAGA AACCGCGTTT 
AATACCAACC TTGAAGCCGC AGACGAAATT GCCCGCCAAT TGCGCCTGCG TGACCTCGGC 
GGCCTGATCG TTATCGACTT TATTGATATG ACTCCGGTTC GCCACCAGCG TGAAGTAGAA 
AACCGCCTGC GAGATTCCGT ACGTCAGGAT CGTGCACGTA TCCAGATTGG CCGCATTTCC 
CGCTTCGGTC TGTTGGAAAT GTCGCGTCAG CGTCTGAGTC CGTCACTGGG TGAATCCAGC 
CATCACGTCT GCCCACGTTG TAGCGGTACA GGTACGATTC GTGACAATGA ATCACTTTCT 
CTGTCTATTC TTCGCCTGAT TGAAGAAGAA GCGCTGAAAG AAAACACCAA AGAAGTCCAC 
GCGATTGTTC CAGTCCAGAT TGCTTCTTAT CTGCTGAACG AGAAGCGTGA TGCCGTTAAC 
GCCATTGAGA AACGTCAAGG CGGCGTGCGT GCAGTCATCG TGCCACACGA TGGCATGCAA 
ACACCTCACT ACTCCGTTGT CCGCGTCCGT AAAGGCGAAG AAAAGCCAAC GCTCAGCTAT 
CTGCTGCCTC AGCGTTTGGA AACGGAAACA CAGCAACAGC AAGACGAACA GACGATTGAA 
CGTAAACAGC CTGAGCAACC TGCTTTAGCG ACGTTTACCA TGGCAGAAAT GCCAGCGGAA 
ACCGCACCGT CGGTAGCCAA AGCGACACCT GCTGCGGCAA AACCTGCGGA AACCGCTCAG 
CCAGGCCTCA TCAGCCGTTT CTTCAGCGCC TTAAAAAGCG CCTTTGCTTC TGAACCTGCG 
GTAAAAGCAG CGGATAGCGT TGACGAGAAG AAGGCAGAAG AAGAGAAATC GGCTGACGGT 
CAGCGTTCTG AGCGTCGGAA TTCTCGTCGT CAGGGCAATA ACCGCCGCGA TCGCAATTCT 
CGTGACGATC GTGGTTCTCG TGACAATCGT GAACAGCGTG ATGAGCAGCG CCGTAATAAG 
CGACAGAACG AGGAAGTGGT TGCGGAAAAC GCGGAGAAAA CCAGTTCAGA AGAACAGCCT 
CGCCGTGAAC CGCGTGCTGA GCGCCAGCGT CGTCGTCAGG ATGAGCGCCG TCAAGCTTCT 
TCTAACGAAG CAAAAGCGCA GCCAGCGATT GATGATTCTG ATGACAACGC CACCGAGCAG 
GATAAACCGA CTCAGGTTAT GCCACGTCGT CAACGCCGTC AGTTGTCGCA GAAAGTACGT 
GTTCAGTCTG ACACTCAGCA GGATACCCTC TCCGATAGCA CAGTACCTGT CGCTGTTCCA 
TCTGAGCAGG CTCAATCCTA TGTCAAGTCG AACGAGGCTG CGGTAGACAA CAACGAGGTC 
GATAGCGAGC AAAACGACGC AAATCGTGCC AACGCCGAGA ATGGGGGAAT GCCACGTCGT 
TCACGCCGTT CGCCGCGTCA CCTGCGCGTC AGCGGCCAGC GCCGTCGTCG TTATCGTGAT 
GAGCGCTACC CGTCTCAATC TCCGATGCAG TTGGAATTTG CCGCCGCATC ACCGGAAATG 
GCATCAGGAA AAGTGTGGAT TAGCTATCCT CTTGCCCAGA CACAGCAGGC TGAAGGCCAA 
CCGCAGGACG AGAACGTTGC GGCGATTGAA ACACCGCTGT TGCCAACCGT CGTCGAAACT 
GCAGTGACTA CGCAAATCGA TACCGCAGAA TCCAACCTAG CTGAAAATGT GGCGATTGCT 
GAAGTCGCGA TTCAGGAAGA CGCTGTTGTC ACCGCAACAG CACAATCTGC CGACGTGATT 
CAGGATAGCA ATGTCGCAAA TGTCGAGGTG AGTGCCGCAG ACGAAAAAAC CGTCGTCGAG 
CCCGTTACCG AGAACACCGC TATCGACGAT GCTATCGCTG CGGTTGCCGT AAGTGCCGTT 
GAGGAAGCAA AGGTTGCTGA TACGGCTCTG GCTGCTGAAG ACGTACAGAT CGTTGAACCT 
GTTGCGGCTG AAACTGTAAT TGCTGAAACT TTAGCTACTG ACGATGTCGC TACGGAAGCA 
TCCGCAGAAG ACAAGCAGAC GGATAGCATT GCTGATGCAA CCGAGAAAGC TGATGTGGCA 
GAACCCGTTT CTACTCCGGC AGTTTCCGCA GTACAGGAAA CTATCCCGCC ACAGCGCGCT 
CAGGATGAAC CTGCCACCGC GGCCAGCGCA CAGCCGATAG TGGAAGAACC TGTATCGAGC 
GTAGCAAAAG CAGCAACCGT TGCTGAGCAA CCACGCTATA AGTTCCATGC GACAGCGCCG 
ATGACCAAGG CTCCTGCGCC GGCATACCAC GCGGAACCAG CTCGACAGAG TGATTGGGTT 
CGTCCTGCCT ATCCGTTCTC AGGAAAAGGT TCGGCAGGCG GTCATGCGGC AGTTAACCAG 
TCAACTGCGC CAGCAACCAA GCCTACACCT GTCAGCGAAT AA 

 

Protein sequence

MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY 
GAERHGFLPL KEIAREYFPS NYASHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI 
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALGSLQL PDGMGLIVRT AGVGKSAEAL 
QWDLAFRLKH WDAIKKAAEG RPAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKILDLA 
KEHISALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT 
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE 
NRLRDSVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTIRDNESLS 
LSILRLIEEE ALKENTKEVH AIVPVQIASY LLNEKRDAVN AIEKRQGGVR AVIVPHDGMQ 
TPHYSVVRVR KGEEKPTLSY LLPQRLETET QQQQDEQTIE RKQPEQPALA TFTMAEMPAE 
TAPSVAKATP AAAKPAETAQ PGLISRFFSA LKSAFASEPA VKAADSVDEK KAEEEKSADG 
QRSERRNSRR QGNNRRDRNS RDDRGSRDNR EQRDEQRRNK RQNEEVVAEN AEKTSSEEQP 
RREPRAERQR RRQDERRQAS SNEAKAQPAI DDSDDNATEQ DKPTQVMPRR QRRQLSQKVR 
VQSDTQQDTL SDSTVPVAVP SEQAQSYVKS NEAAVDNNEV DSEQNDANRA NAENGGMPRR 
SRRSPRHLRV SGQRRRRYRD ERYPSQSPMQ LEFAAASPEM ASGKVWISYP LAQTQQAEGQ 
PQDENVAAIE TPLLPTVVET AVTTQIDTAE SNLAENVAIA EVAIQEDAVV TATAQSADVI 
QDSNVANVEV SAADEKTVVE PVTENTAIDD AIAAVAVSAV EEAKVADTAL AAEDVQIVEP 
VAAETVIAET LATDDVATEA SAEDKQTDSI ADATEKADVA EPVSTPAVSA VQETIPPQRA 
QDEPATAASA QPIVEEPVSS VAKAATVAEQ PRYKFHATAP MTKAPAPAYH AEPARQSDWV 
RPAYPFSGKG SAGGHAAVNQ STAPATKPTP VSE