| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2478 |
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| Symbol | |
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| ID | 8133424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2842641 |
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| End bp | 2846093 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644865760 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003018045 |
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| Protein GI | 253688855 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.349906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCCTG AAAATTACCG TTATTCGCTG CCATCCAAAG CCGGTGAGCA GCGCCTGCTG
GGCCAGTTAA CCGGCGCTGC CTGCGCCGTT GAATGTGCAG AGATTATTGA ACGCCACGCC
GGGCTGGTGG TGCTTATCGC TCCCGATATG CAAAATGCCC TGCGCTTACG CGATGAGATT
CAGCAATTTA CCGACCAGCA CGTCACCACG CTGCCTGACT GGGAAACGCT GCCCTACGAT
AGTTTTTCTC CGCATCAGGA GATTATTTCG ACTCGCCTTT CCACGCTCTA TCAACTCCCC
AACATGACGC GCGGCGTTCT GATTCTGCCG GTTAACACGC TCATGCAGCG CGTCTGTCCG
CACAGTTTCC TGCACGGCCA TGCGTTGGTG TTGAAAAAAG GCCAGCGCCT CTCACGCGAT
AAGCTGCGTT CGCAATTGGA GCAGGCGGGC TATCGCAGTG TCGATCAGGT CATGGAACAC
GGTGAATATG CCACGCGCGG CGCGTTGTTA GATCTGTTCC CAATGGGGAG CGAAGAACCT
TATCGTATCG ATTTCTTTGA TGACGAGATC GACAGTCTGC GTCTGTTCGA TGTGGATACG
CAGCGCACGC TGAATGAAGT GCCGCACATT AATCTGCTGC CTGCGCACGA GTTCCCAACG
GATAAAACCG CTATCGAACT TTTTCGCAGC CAGTGGCGCG AACAGTTCGA AGTACGGCGC
GATGCCGAGC ATATCTACCA ACAGGTCAGC AAAGGCGTCT GGCCAGCAGG GATCGAATAC
TGGCAGCCGT TATTCTTCAG TGAACCGCTG CCATCGCTGT TTAGTTACTT CCCTAATAAC
ACGCTGATCG TCAACACGGG GAATATCGAA CAGAGCGCCG AGCGCTTCTG GCAGGATATT
CAGCAGCGTT TTGAAAGCCG CCGTGTCGAT CCCATGCGCC CATTACTGCC GTCAGACTCA
CTCTGGCTGC GGGTAGAAGG TCTGTTCACG GAGCTGAAAG CGTGGCCGCG CGTACAGTTG
AGAACCGATA CACTGCCGGA AAAAGCCGCC AACGTGAATC TGGCCTATCT GCCGTTGCCA
GAGATGGCGA TTCAGCATCA ACAGAAATCC CCGCTGGATG CACTGCGCCG CTTCATCGAA
CAGTCCGAAG GTCAGGTCAT TTTCTCCGTC GAGAGCGAGG GCCGTCGCGA AACGCTACAA
GAGCTATTGG CACGCATCAA ACTGAATCCT ACGCTCATCA GCACACTGGA ACAGGCTCAG
GAGCGTGGCA CCTACCTAAT CATCGGTGCC AGCGAGCACG GTTTTATCGA CACGCTGCGC
CAGCGTGCCT TAATCTGCGA AAGCGATCTG CTGGGCGAAC GCGTTAGCCG TCGTCGTCAG
GATAATCGCC GCACGATCAA TACCGATACG TTGATCCGCA ATCTGGCAGA ACTGCGACCG
GGGCAACCCG TCGTCCATCT TGAACACGGC GTTGGTCGCT ATGCTGGGCT GACAACGCTG
GAAGCCGGCG GCATCAAGGC TGAATACCTG ATTTTGACCT ATGCGGGCGA AGACAAGCTG
TACGTCCCCG TTTCTTCACT GCATTTGATC AGCCGCTACG CAGGCGGTGC CGATGAAAAT
GCACCGCTGC ATAAACTGGG TGGCGATGCG TGGTCACGCG CACGGCAAAA AGCGGCGGAA
AGAGTACGTG ATGTCGCCGC CGAACTGCTG GATATTTATG CTCAGCGCGC AGCGAAAAGC
GGTTTTGCCT TTAAACATGA CAAAACGCAG TATCAGCTTT TCTGCGAAAG CTTCCCCTTT
GAAACGACCC CCGATCAGGC GCAGGCCATC AACGCCGTAC TGAGCGACAT GTGCCAGCCG
CTGGCAATGG ATCGTCTGGT GTGTGGCGAT GTCGGTTTTG GTAAAACCGA AGTGGCGATG
CGCGCCGCGT TTCTGGCGGT TGAAAACCAC AAGCAGGTTG CCGTTCTGGT GCCAACGACG
CTGTTGGCTC AACAGCATTT TGACAACTTC CGCGATCGCT TTGCCAACTG GCCAGTGAAG
ATTGAAATGA TCTCCCGCTT CCGCAGTGCG CGTGAGCAAA CTCAGGTGCT GGAGGAAACG
CAGGAAGGCA AGGTCGATAT TCTGATCGGC ACCCATAAGC TGTTGCAGAG CGACGTGCGC
TGGCGCGACT TAGGGCTGTT GATTGTGGAC GAAGAACACC GCTTCGGCGT GCGTCACAAA
GAGCGCATCA AAGCGATGCG AGCGGATGTC GATATCCTGA CGCTAACCGC TACGCCGATT
CCGCGCACGC TCAACATGGC GATGAGCGGG ATGCGCGATC TGTCAATCAT CGCCACGCCC
CCTGCCCGTC GTTTAGCGGT AAAAACGTTC GTGCGCGAAT ATGACAATCT GGTGGTGCGC
GAAGCCATCC TGCGTGAAAT CCTGCGCGGC GGGCAGGTGT ATTACCTCTA TAACGATGTC
GAAAATATCG AAAAAGCCAC TCAGCGACTG GCGGAACTGG TGCCGGAAGC ACGTATCGCT
ATCGGCCACG GCCAGATGCG TGAACGTGAG CTGGAACGGG TCATGAATGA CTTCCACCAC
CAGCGTTTTA ACGTGCTGGT GTGTACCACC ATCATCGAAA CCGGGATCGA CATCCCGAGC
GCCAACACCA TCATCATCGA GCGTGCCGAC CACTTCGGTC TGGCTCAGTT ACACCAGTTG
CGTGGCCGCG TTGGGCGTTC CCATCATCAG GCTTATGCCT ACCTGCTGAC GCCGAACCCC
AAAGCGATGA GTACCGATGC GCAGAAACGT CTGGAAGCGA TCGCCTCGCT GGAAGACCTC
GGTGCCGGTT TTGCGCTGGC CACGCACGAT CTGGAAATCC GTGGCGCAGG TGAACTGCTC
GGGGACGATC AGAGTGGACA GATGACCAGC GTCGGTTTCT CGTTATATAT GGAACTGCTG
GAAAGCGCCG TCGATGCCTT GAAAGCAGGC CGAGAGCCAT CGCTGGAAGA TCTGATCAAC
AGTCAGACCG ACGTCGAACT GCGTTTGCCT GCTCTGCTGC CCGATGATTT CATCCCCGAC
GTCAATACGC GCCTGTCGCT ATACAAACGT ATCGCCAGTG CGAAAACCAG CGACGAGCTG
GATGAACTGA AGGTCGAACT GATCGATCGT TTCGGTCTCC TTCCCGATGC AAGCCGCTAT
CTGTTGCAGA TTGCTGCCCT GCGCCAGCAG GCGCAAGCGC TGGGTATTCG CCGTATTGAA
GGCAATGAGA AAGGTGGATT TATCGAATTC AGCGAGCAAA ATCGCGTCGA TCCCTCTCAC
CTCATCGGCT TGTTACAGCG CGACCCGGGC ACCTACCGTC TTGATGGCCC AACCCGCCTG
AAATTTATGA AGGATTTAAG CGATCGCCCG CAGCGCATTG AGTTTATCGG TTCGCTGCTG
GGGAACATGG CGCAGCATAC GCTGGCGGCG TAA
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| Protein sequence | MMPENYRYSL PSKAGEQRLL GQLTGAACAV ECAEIIERHA GLVVLIAPDM QNALRLRDEI
QQFTDQHVTT LPDWETLPYD SFSPHQEIIS TRLSTLYQLP NMTRGVLILP VNTLMQRVCP
HSFLHGHALV LKKGQRLSRD KLRSQLEQAG YRSVDQVMEH GEYATRGALL DLFPMGSEEP
YRIDFFDDEI DSLRLFDVDT QRTLNEVPHI NLLPAHEFPT DKTAIELFRS QWREQFEVRR
DAEHIYQQVS KGVWPAGIEY WQPLFFSEPL PSLFSYFPNN TLIVNTGNIE QSAERFWQDI
QQRFESRRVD PMRPLLPSDS LWLRVEGLFT ELKAWPRVQL RTDTLPEKAA NVNLAYLPLP
EMAIQHQQKS PLDALRRFIE QSEGQVIFSV ESEGRRETLQ ELLARIKLNP TLISTLEQAQ
ERGTYLIIGA SEHGFIDTLR QRALICESDL LGERVSRRRQ DNRRTINTDT LIRNLAELRP
GQPVVHLEHG VGRYAGLTTL EAGGIKAEYL ILTYAGEDKL YVPVSSLHLI SRYAGGADEN
APLHKLGGDA WSRARQKAAE RVRDVAAELL DIYAQRAAKS GFAFKHDKTQ YQLFCESFPF
ETTPDQAQAI NAVLSDMCQP LAMDRLVCGD VGFGKTEVAM RAAFLAVENH KQVAVLVPTT
LLAQQHFDNF RDRFANWPVK IEMISRFRSA REQTQVLEET QEGKVDILIG THKLLQSDVR
WRDLGLLIVD EEHRFGVRHK ERIKAMRADV DILTLTATPI PRTLNMAMSG MRDLSIIATP
PARRLAVKTF VREYDNLVVR EAILREILRG GQVYYLYNDV ENIEKATQRL AELVPEARIA
IGHGQMRERE LERVMNDFHH QRFNVLVCTT IIETGIDIPS ANTIIIERAD HFGLAQLHQL
RGRVGRSHHQ AYAYLLTPNP KAMSTDAQKR LEAIASLEDL GAGFALATHD LEIRGAGELL
GDDQSGQMTS VGFSLYMELL ESAVDALKAG REPSLEDLIN SQTDVELRLP ALLPDDFIPD
VNTRLSLYKR IASAKTSDEL DELKVELIDR FGLLPDASRY LLQIAALRQQ AQALGIRRIE
GNEKGGFIEF SEQNRVDPSH LIGLLQRDPG TYRLDGPTRL KFMKDLSDRP QRIEFIGSLL
GNMAQHTLAA
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